mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 2,287,403 | 1 | .→A | 1.5% | 15.4 ‑0.4 ‑0.1 | 344 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 3,152,854 | 1 | .→A | 1.2% | 10.3 ‑0.5 ‑0.0 | 330 | coding (636/660 nt) | yghB | inner membrane protein |
| * | NC_007779 | 3,333,429 | 1 | .→A | 0.9% | 7.0 0.0 ‑0.1 | 340 | intergenic (‑123/‑136) | rplU/ispB | 50S ribosomal protein L21/octaprenyl diphosphate synthase |
| * | NC_007779 | 706,385 | 1 | .→T | 0.9% | 6.8 0.0 ‑0.1 | 326 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 4,200,831 | 1 | .→G | 0.9% | 6.7 ‑2.2 ‑0.0 | 331 | intergenic (+31/‑76) | rplQ/yhdN | 50S ribosomal protein L17/hypothetical protein |
| * | NC_007779 | 107,544 | 1 | .→T | 0.8% | 6.6 ‑2.2 ‑0.1 | 353 | intergenic (+70/‑161) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | NC_007779 | 2,731,787 | 0 | G→C | 1.3% | 6.5 0.0 ‑0.1 | 378 | A348G (GCG→GGG) | clpB | protein disaggregation chaperone |
| * | NC_007779 | 3,613,146 | 1 | .→C | 0.5% | 3.1 ‑1.7 ‑0.8 | 369 | intergenic (‑19/+23) | tatD/tatC | DNase, magnesium‑dependent/TatABCE protein translocation system subunit |
| * | NC_007779 | 1,498,414 | 1 | .→A | 0.6% | 2.6 0.0 ‑0.3 | 325 | intergenic (+69/‑186) | ydcJ/mdoD | hypothetical protein/glucan biosynthesis protein, periplasmic |
| * | NC_007779 | 3,589,635 | 1 | .→G | 0.6% | 2.5 ‑1.4 ‑0.2 | 336 | coding (81/2787 nt) | polA | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | NC_007779 | 890,753 | 1 | .→T | 0.6% | 2.4 0.0 ‑0.0 | 327 | coding (243/378 nt) | ybjM | inner membrane protein |
| * | NC_007779 | 1,781,197 | 1 | .→T | 0.6% | 2.4 0.0 ‑0.1 | 326 | intergenic (‑182/‑134) | ydiP/ydiQ | DNA‑binding transcriptional regulator/hypothetical protein |
| * | NC_007779 | 2,941,549 | 1 | .→T | 0.5% | 2.4 ‑0.7 ‑0.2 | 365 | intergenic (‑326/+25) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein |
| * | NC_007779 | 4,415,931 | 1 | .→T | 0.6% | 2.4 0.0 ‑0.1 | 335 | coding (699/699 nt) | yjfJ | transcriptional regulator effector protein |
| * | NC_007779 | 46 | 1 | .→T | 0.6% | 2.3 ‑1.4 ‑0.3 | 351 | intergenic (–/‑144) | –/thrL | –/thr operon leader peptide |
| * | NC_007779 | 2,757,983 | 1 | .→A | 0.6% | 2.3 ‑0.7 ‑0.2 | 357 | coding (343/1410 nt) | yfjI | hypothetical protein |
| * | NC_007779 | 301 | 1 | .→T | 0.6% | 2.2 ‑1.7 ‑0.3 | 339 | intergenic (+46/‑36) | thrL/thrA | thr operon leader peptide/fused aspartokinase I and homoserine dehydrogenase I |
| * | NC_007779 | 49,800 | 1 | .→T | 0.6% | 2.1 0.0 ‑0.0 | 337 | intergenic (+169/‑23) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| * | NC_007779 | 1,097,402 | 1 | .→A | 0.4% | 1.7 ‑0.7 ‑0.0 | 445 | intergenic (+151/+404) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 194,839 | 1 | .→T | 0.6% | 1.6 0.0 ‑0.0 | 345 | intergenic (+122/‑64) | dxr/ispU | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
| * | NC_007779 | 730,441 | 0 | T→G | 100.0% | ‑0.1 | 1 | V146G (GTG→GGG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,429 | 0 | T→G | 100.0% | ‑0.2 | 1 | V142G (GTG→GGG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 4,512,846 | 0 | C→A | 100.0% | ‑0.2 | 1 | W151L (TGG→TTG) | insI | IS30 transposase |
| * | NC_007779 | 227,997 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2239/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,998 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2240/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,000 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2242/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,001 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2243/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,002 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2244/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,003 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2245/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,004 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2246/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,006 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2248/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,007 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2249/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,008 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2250/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,009 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2251/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,010 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2252/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,011 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2253/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,012 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2254/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,013 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2255/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,014 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2256/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,015 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2257/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,016 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA |