New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 3987186 =NA (NA)224 (1.040) 124/178 NT 100% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 0 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein

Only 100 of 197 total aligned reads displayed.

TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278
                                                                                                    |                                                                                            
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                              >  1:2242219/1‑101 (MQ=255)
tGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaagg                                                                                              <  1:14136149/101‑1 (MQ=255)
  ttGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaa                                                                                            <  1:11313142/101‑1 (MQ=255)
   tGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaag                                                                                           >  1:354210/1‑101 (MQ=255)
    taaaaTAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                          <  1:12507345/100‑1 (MQ=255)
    gAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTaaggaagg                                                                                          >  1:9952440/1‑101 (MQ=255)
         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGa                                                                                     <  1:1812060/101‑1 (MQ=255)
         tAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGa                                                                                     >  1:7957893/1‑101 (MQ=255)
          aaaCCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGaa                                                                                    >  1:1299695/1‑101 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 >  1:9189789/1‑101 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 >  1:2657076/1‑101 (MQ=255)
             ccTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACaa                                                                                 <  1:4628916/101‑1 (MQ=255)
              tttCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAg                                                                                >  1:5754021/2‑101 (MQ=255)
               ttCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGt                                                                               >  1:13810818/1‑101 (MQ=255)
                tCGATTTGTTTGTCAAGATATTGTCCATCTTTATGTAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTc                                                                              <  1:5591318/101‑1 (MQ=255)
                 cGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGGGCGAACAAGTcc                                                                             >  1:2323948/1‑101 (MQ=255)
                   aTTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCt                                                                           >  1:13297551/1‑101 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:4051932/101‑1 (MQ=255)
                    tttgtttgTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTg                                                                          <  1:13126946/101‑1 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                         <  1:7145730/101‑1 (MQ=255)
                     ttgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGa                                                                         >  1:7861943/1‑101 (MQ=255)
                      tgtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGat                                                                        <  1:12735363/101‑1 (MQ=255)
                       gtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                       <  1:8543239/101‑1 (MQ=255)
                       gtttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGata                                                                       >  1:7294592/1‑101 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:6758853/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      <  1:8987632/101‑1 (MQ=255)
                        tttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGatat                                                                      >  1:13487813/1‑101 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                     <  1:9446203/101‑1 (MQ=255)
                         ttgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATg                                                                     >  1:5284465/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                    >  1:13604031/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                    >  1:8094924/1‑101 (MQ=255)
                          tgtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATga                                                                    <  1:13083506/101‑1 (MQ=255)
                           gtCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATgag                                                                   <  1:8245411/101‑1 (MQ=255)
                             cAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAt                                                                 <  1:3272030/101‑1 (MQ=255)
                              aaGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATc                                                                >  1:11090160/1‑101 (MQ=255)
                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                              >  1:8202411/1‑101 (MQ=255)
                                gATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAt                                                              <  1:5387517/101‑1 (MQ=255)
                                 atatTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATg                                                             >  1:5865981/1‑101 (MQ=255)
                                   atTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGtt                                                           >  1:47569/1‑101 (MQ=255)
                                     tGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         >  1:1618166/1‑101 (MQ=255)
                                     agTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                                         >  1:13940498/2‑101 (MQ=255)
                                      gTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGt                                                        <  1:3933633/101‑1 (MQ=255)
                                       tCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                                       <  1:4472569/101‑1 (MQ=255)
                                       tCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                                       >  1:10049517/1‑101 (MQ=255)
                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      <  1:5204990/101‑1 (MQ=255)
                                        ccATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCa                                                      >  1:10453218/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   >  1:4446585/1‑101 (MQ=255)
                                           tCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCt                                                   <  1:1093023/101‑1 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  >  1:11981414/1‑101 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  <  1:13773218/101‑1 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  >  1:11447613/1‑101 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  <  1:1926118/101‑1 (MQ=255)
                                            cTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                                  >  1:9736695/1‑101 (MQ=255)
                                             tttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                 >  1:7818078/1‑101 (MQ=255)
                                             tttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                                 <  1:4561542/101‑1 (MQ=255)
                                              ttATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGa                                                <  1:7535286/101‑1 (MQ=255)
                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCCCCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               <  1:2090440/101‑1 (MQ=255)
                                               tatataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                               >  1:10625405/1‑101 (MQ=255)
                                                 tataATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGcc                                             <  1:11709/101‑1 (MQ=255)
                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          >  1:8696736/1‑101 (MQ=255)
                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                          <  1:4133488/101‑1 (MQ=255)
                                                    aaTTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATAGTGTTTGTCATCTGGAGCCATa                                          >  1:9827762/1‑101 (MQ=255)
                                                      tttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                                        >  1:6346773/1‑101 (MQ=255)
                                                       ttGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGaa                                       >  1:8422456/1‑101 (MQ=255)
                                                         gggggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                                     >  1:4910515/1‑101 (MQ=255)
                                                            ggTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAggg                                  >  1:3006286/1‑101 (MQ=255)
                                                              tAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                                <  1:5937948/101‑1 (MQ=255)
                                                                gggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                              <  1:9559946/101‑1 (MQ=255)
                                                                 ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                             <  1:10804331/101‑1 (MQ=255)
                                                                 ggTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcat                             <  1:6842653/101‑1 (MQ=255)
                                                                   tgtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatca                           >  1:4335494/1‑101 (MQ=255)
                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          >  1:8774286/1‑101 (MQ=255)
                                                                    gtTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                          <  1:16617/101‑1 (MQ=255)
                                                                     ttCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg                         >  1:12396621/1‑101 (MQ=255)
                                                                     ttCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg                         <  1:1388140/101‑1 (MQ=255)
                                                                     ttCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg                         >  1:4423515/1‑101 (MQ=255)
                                                                      tCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGa                        <  1:2291923/101‑1 (MQ=255)
                                                                      tCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGa                        <  1:3322053/101‑1 (MQ=255)
                                                                        tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      >  1:11575526/1‑101 (MQ=255)
                                                                        tttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGt                      >  1:7460918/1‑101 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     >  1:315533/1‑101 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     >  1:1121814/1‑101 (MQ=255)
                                                                         ttATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc                     >  1:12337675/1‑101 (MQ=255)
                                                                          tATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca                    <  1:13257836/101‑1 (MQ=255)
                                                                            tGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatc                  <  1:357047/101‑1 (MQ=255)
                                                                            tGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatc                  >  1:8404985/1‑101 (MQ=255)
                                                                             gTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca                 <  1:11858957/101‑1 (MQ=255)
                                                                              tAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCaa                <  1:10389932/101‑1 (MQ=255)
                                                                               aaaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc               <  1:14193567/101‑1 (MQ=255)
                                                                                aaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACt              <  1:6457006/101‑1 (MQ=255)
                                                                                aaaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACt              >  1:1005737/1‑101 (MQ=255)
                                                                                 aaaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt             >  1:11376419/1‑101 (MQ=40)
                                                                                  aaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            <  1:12137216/101‑1 (MQ=40)
                                                                                  aaaaTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa            <  1:4169565/101‑1 (MQ=40)
                                                                                     aTAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCt         >  1:3856391/1‑101 (MQ=37)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:6633126/101‑1 (MQ=34)
                                                                                       aGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTc       <  1:2662280/101‑1 (MQ=34)
                                                                                           tCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCg   <  1:11565446/101‑1 (MQ=31)
                                                                                            cACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  >  1:3587962/1‑101 (MQ=11)
                                                                                            cACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGa  <  1:5986549/101‑1 (MQ=11)
                                                                                                    |                                                                                            
TGTTGAAAATAAACCTTCGATTTGTTTGTCAAGATATTGTCCATCTTTATATAATTTGGGGGTAGGGTGTTCTTTATGTAAAAAAATAGTGTCACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA  >  NC_007779/3987086‑3987278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.