| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,915 | A→G | 29.7% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,915 | 0 | A→G | 29.7% | 246.2 ‑1.1 ‑2.7 | 261 | noncoding (1145/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (48/29): ref base (101/81): total (151/110) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.38e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.94e-03 | ||||||||||
Only 100 of 267 total aligned reads displayed.
CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224815‑224990 | cAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGa < 1:8869512/101‑1 (MQ=33)cAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGa < 1:608128/101‑1 (MQ=32) aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGaa < 1:2376922/101‑1 (MQ=33) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACt > 1:10668583/1‑101 (MQ=32) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACt < 1:2569690/101‑1 (MQ=33) tgctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTc > 1:12631395/1‑101 (MQ=32) tgctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTc < 1:3007116/101‑1 (MQ=33) gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCa < 1:13141680/101‑1 (MQ=33) gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCa > 1:12153525/1‑101 (MQ=32) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCaaa > 1:6355735/1‑101 (MQ=32) gcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAg > 1:4526973/1‑101 (MQ=32) cATGGCTGTTGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAgg < 1:5976203/101‑1 (MQ=17) tGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGgag > 1:2769326/1‑101 (MQ=32) ggCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGgaga > 1:10483139/1‑101 (MQ=32) gCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGAc > 1:14159112/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg > 1:7244659/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg < 1:2449614/101‑1 (MQ=33) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGGCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg > 1:8660187/1‑101 (MQ=17) tcgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGcc > 1:3166121/1‑101 (MQ=32) cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCa > 1:6652935/1‑101 (MQ=32) cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATATTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCa > 1:11714134/1‑101 (MQ=17) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg < 1:12703399/101‑1 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:11867949/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:8449163/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:10979123/1‑101 (MQ=32) tcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGt > 1:1552467/1‑101 (MQ=32) tcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGt < 1:3354218/101‑1 (MQ=32) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTg < 1:14047240/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:2355435/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:5046771/101‑1 (MQ=32) ttgaGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:10126628/101‑1 (MQ=17) tgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagg > 1:2823463/1‑101 (MQ=33) aaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAg < 1:2181329/101‑1 (MQ=32) aTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAgg < 1:5328919/101‑1 (MQ=32) aTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAgg > 1:2060314/1‑101 (MQ=32) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg < 1:3991599/101‑1 (MQ=32) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg < 1:13525043/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg < 1:10959057/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg > 1:10329019/1‑101 (MQ=33) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:13791209/1‑101 (MQ=2) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:10790841/1‑101 (MQ=2) ttAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGAt < 1:4789775/101‑1 (MQ=2) ttAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATg < 1:4107974/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:5155791/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:11225736/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGTGATGAc > 1:6494202/1‑101 (MQ=17) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc > 1:7427463/1‑101 (MQ=33) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc < 1:9012945/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc > 1:5603006/1‑101 (MQ=33) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAc > 1:5877103/1‑101 (MQ=2) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGATAACTC‑GGAGGAAGGTGGGGATGAc > 1:1654613/1‑101 (MQ=2) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg > 1:4064472/1‑101 (MQ=33) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg < 1:6891509/101‑1 (MQ=32) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg > 1:12322073/1‑101 (MQ=33) tCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt < 1:6480087/101‑1 (MQ=2) tCCCGCAACGAGCGCAACCCTTGTCTTATGTCGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt < 1:304109/101‑1 (MQ=2) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc < 1:8726058/101‑1 (MQ=32) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:7590529/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa > 1:8882457/1‑101 (MQ=33) cccGCAACGAGCGCAACCCTTATCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTT‑AACTCGGAGGAAGGTGGGGATGACGTc < 1:9839145/101‑1 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa < 1:4553801/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:4423166/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:9136366/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:6839135/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAg > 1:4639664/1‑101 (MQ=33) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaaa < 1:9540384/101‑2 (MQ=255) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12938796/1‑99 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:4221106/1‑101 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc < 1:3402153/101‑1 (MQ=2) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:516999/101‑1 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:9316117/1‑101 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:3499006/1‑101 (MQ=33) aCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtca < 1:13269107/101‑1 (MQ=2) aCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcat > 1:13748724/1‑101 (MQ=33) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:11570512/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcat < 1:10463415/101‑1 (MQ=2) aGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat < 1:8272132/101‑1 (MQ=32) aGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat > 1:5363345/1‑101 (MQ=33) gcgcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATg > 1:12563373/1‑101 (MQ=33) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg > 1:13655212/1‑101 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:1201873/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:13357075/101‑1 (MQ=2) cgcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATgg < 1:3091150/101‑1 (MQ=32) gcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc > 1:6267781/1‑101 (MQ=32) cAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATgcc > 1:5469562/1‑99 (MQ=2) cAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:6199676/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:11406224/1‑101 (MQ=32) aaCCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGccc > 1:7902989/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 1:9712954/101‑1 (MQ=32) ccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa > 1:3834356/1‑101 (MQ=32) ccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:1342871/101‑1 (MQ=32) cTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc < 1:11751747/101‑1 (MQ=32) cTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc > 1:1965204/1‑101 (MQ=32) cTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc < 1:1853418/101‑1 (MQ=32) tATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa > 1:8108502/1‑101 (MQ=32) tATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa < 1:2633253/101‑1 (MQ=32) aTCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc > 1:2724086/1‑101 (MQ=32) cTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa > 1:12964806/1‑101 (MQ=31) cTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa < 1:11644207/101‑1 (MQ=31) ttttGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg < 1:381990/101‑1 (MQ=11) | CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224815‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |