| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,920 | A→G | 32.4% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,920 | 0 | A→G | 32.4% | 252.4 ‑1.3 ‑0.0 | 247 | noncoding (1150/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (51/29): ref base (94/73): total (145/102) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.73e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.96e-01 | ||||||||||
Only 100 of 258 total aligned reads displayed.
GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224820‑224990 | gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCa > 1:12153525/1‑101 (MQ=32)gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCa < 1:13141680/101‑1 (MQ=33) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCaaa > 1:6355735/1‑101 (MQ=32) gcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAg < 1:2573337/101‑1 (MQ=33) cATGGCTGTTGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAgg < 1:5976203/101‑1 (MQ=17) tGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGgag < 1:8338559/101‑1 (MQ=32) ggCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGgaga < 1:6020388/101‑1 (MQ=33) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg > 1:7244659/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg > 1:3598759/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg < 1:2449614/101‑1 (MQ=33) cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCa > 1:6652935/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg < 1:12703399/101‑1 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:11867949/1‑101 (MQ=32) tcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGt < 1:7327437/101‑1 (MQ=32) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTg > 1:2094431/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:3285884/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:2862432/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa > 1:2381408/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa > 1:6785074/1‑101 (MQ=32) tCGTGTTGTGGAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaa > 1:10476675/1‑101 (MQ=17) tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaa > 1:13679017/1‑101 (MQ=32) tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaa > 1:4372107/1‑101 (MQ=32) cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa > 1:11657422/1‑101 (MQ=32) tgttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACt < 1:192125/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg > 1:4538466/1‑101 (MQ=33) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:5046771/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg > 1:5644038/1‑101 (MQ=32) ttgaGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:10126628/101‑1 (MQ=17) tgtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gga < 1:2353571/101‑1 (MQ=32) gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggag < 1:12637999/101‑1 (MQ=32) aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGaa > 1:2729407/1‑101 (MQ=33) aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGaa > 1:8642236/1‑101 (MQ=32) aaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAg < 1:4813995/101‑1 (MQ=32) aTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAgg < 1:5328919/101‑1 (MQ=32) gTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTg > 1:9148315/1‑101 (MQ=33) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg < 1:10959057/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg < 1:3085996/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg > 1:10329019/1‑101 (MQ=33) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:10790841/1‑101 (MQ=2) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGa < 1:13765061/101‑1 (MQ=32) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGa < 1:1493612/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:5155791/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:6282535/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:11225736/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGTGATGAc > 1:6494202/1‑101 (MQ=17) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc < 1:9012945/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc > 1:5603006/1‑101 (MQ=33) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg < 1:6891509/101‑1 (MQ=32) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg > 1:10695988/1‑101 (MQ=33) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:13264395/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGt < 1:1199420/101‑1 (MQ=32) tCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt < 1:6480087/101‑1 (MQ=2) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc > 1:13477223/1‑101 (MQ=33) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:7590529/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:199483/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa > 1:7760696/1‑101 (MQ=33) cccGCAACGAGCGCAACCCTTATCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTT‑AACTCGGAGGAAGGTGGGGATGACGTc < 1:9839145/101‑1 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGtga > 1:1605749/1‑99 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa < 1:4553801/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:4423166/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAg > 1:4639664/1‑101 (MQ=33) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:2655674/1‑100 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12938796/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:3992355/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaaat < 1:3157502/101‑3 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:2772573/1‑99 (MQ=2) cAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtc > 1:4112276/1‑101 (MQ=33) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc < 1:8054046/101‑1 (MQ=255) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAAtc < 1:14152638/101‑1 (MQ=255) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:9316117/1‑101 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:516999/101‑1 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:14040708/1‑101 (MQ=33) aCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:12312720/1‑101 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtca < 1:3411816/101‑1 (MQ=255) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat < 1:3371983/101‑1 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:11570512/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9560509/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcat < 1:10463415/101‑1 (MQ=2) aGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcatca < 1:4101839/101‑1 (MQ=2) aGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat > 1:5363345/1‑101 (MQ=33) aGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat < 1:8272132/101‑1 (MQ=32) aGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat > 1:12559472/1‑101 (MQ=33) gcgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAATcatcat < 1:3824793/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:8705456/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg > 1:13655212/1‑101 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:13357075/101‑1 (MQ=2) gcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGATTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATgc > 1:11013387/1‑100 (MQ=2) cAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATgcc > 1:5469562/1‑99 (MQ=2) cAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:6199676/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:11406224/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAAC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:8854255/1‑101 (MQ=17) cccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 1:3008494/101‑1 (MQ=32) cccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 1:9712954/101‑1 (MQ=32) ccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:1342871/101‑1 (MQ=32) cTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc < 1:8874460/101‑1 (MQ=32) cTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc < 1:11751747/101‑1 (MQ=32) tCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAcc < 1:1798256/101‑1 (MQ=32) cTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa > 1:12964806/1‑101 (MQ=31) cTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa < 1:11644207/101‑1 (MQ=31) ttttGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg < 1:3900606/101‑1 (MQ=11) | GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224820‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |