| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,485,339 | A→C | 9.5% | M170L (ATG→CTG) | hrpA → | ATP‑dependent helicase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,485,339 | 0 | A→C | 9.5% | 75.8 0.0 ‑0.0 | 258 | M170L (ATG→CTG) | hrpA | ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): new base (13/11): ref base (123/97): total (136/122) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.49e-01 | ||||||||||
Only 100 of 266 total aligned reads displayed.
TTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGA > NC_007779/1485239‑1485439 | aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑Tg < 1:7421544/101‑1 (MQ=255) cAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGc < 1:7750607/101‑1 (MQ=255) aaaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCa > 1:7642363/1‑101 (MQ=255) aaaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCa > 1:10236725/1‑101 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAg < 1:3870689/101‑1 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAg < 1:5197667/101‑1 (MQ=255) aGTGCGTTTCAGCGATCCCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGt < 1:357722/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTa < 1:8222548/101‑1 (MQ=255) cGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGa > 1:100778/1‑101 (MQ=255) gtgtCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGac < 1:11955556/98‑1 (MQ=255) cttCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGaca < 1:11278164/100‑1 (MQ=255) tCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACt > 1:9846945/1‑101 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCa < 1:5878446/101‑1 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCat > 1:4884349/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGACGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCat > 1:395564/1‑101 (MQ=255) cACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCattat > 1:11886769/1‑101 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCattatt > 1:1402589/1‑101 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCattatt < 1:9792955/101‑1 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGa > 1:13094274/1‑101 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGa > 1:8938612/1‑101 (MQ=255) tAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGAc > 1:13253711/1‑101 (MQ=255) tAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGAc > 1:425465/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACATTATCATTATTGACg < 1:10570558/101‑1 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACg > 1:7726089/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACg < 1:11798361/101‑1 (MQ=255) aGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACCACACTATCATTATTGACGa > 1:14332944/1‑101 (MQ=255) aGTGATAACACGATGGTCAAGCAGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGa > 1:12329696/1‑101 (MQ=255) tGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAg > 1:3218986/1‑101 (MQ=255) gATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGTAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAgc > 1:11746237/1‑101 (MQ=255) aTAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAgcg < 1:4046499/101‑1 (MQ=255) aTAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAgcg > 1:2966711/1‑101 (MQ=255) aaCACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCa > 1:13880213/1‑101 (MQ=255) aaCACGATGGCCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCCGCAAGACCGCCTGCTG‑A‑TGCAGGACGACACTATCATTATTGACGAAGCGCa > 1:7929880/1‑101 (MQ=255) acacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCAc < 1:1719701/101‑1 (MQ=255) acacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCAc > 1:8129983/1‑101 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACg > 1:681239/1‑101 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:1661801/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:10026515/101‑1 (MQ=255) cGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGaa > 1:6307052/1‑101 (MQ=255) cGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGaa > 1:9949630/1‑101 (MQ=255) gATGGTCAAGCTGGTGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAAc > 1:3386493/1‑101 (MQ=255) gATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAAc < 1:9423439/101‑1 (MQ=255) gcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGc < 1:5355154/93‑1 (MQ=255) ggTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCa < 1:8483950/101‑1 (MQ=255) tCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGc > 1:7476425/1‑101 (MQ=255) aaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCt < 1:6325777/98‑1 (MQ=255) aaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑C‑GTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCt > 1:13636630/4‑101 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt < 1:10479829/101‑1 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt > 1:8023807/1‑101 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt > 1:14064788/1‑101 (MQ=255) aGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTg < 1:10873455/101‑1 (MQ=255) cTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGaa > 1:6234903/1‑101 (MQ=255) cTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑C‑GTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaa > 1:7050752/1‑101 (MQ=255) cTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑C‑GTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaa > 1:9741732/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:4788245/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaac < 1:5787573/101‑2 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑C‑GTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaac > 1:4967340/1‑100 (MQ=255) atgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAacat < 1:1531038/101‑1 (MQ=255) atgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAacat < 1:8841200/101‑1 (MQ=255) tgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATc < 1:8633877/101‑1 (MQ=255) tgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATc < 1:6391924/101‑1 (MQ=255) gaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCg < 1:6760842/101‑1 (MQ=255) gaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCG‑TG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCg < 1:2079879/101‑1 (MQ=255) ccGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGac < 1:5294527/101‑2 (MQ=255) ccGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGac < 1:9217276/101‑2 (MQ=255) aCGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttt < 1:2313365/101‑1 (MQ=255) cGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑C‑GTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGActtcc < 1:13973033/101‑3 (MQ=255) ggTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttttt > 1:6367562/1‑101 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:13346858/1‑101 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:1248278/1‑101 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:6609943/1‑101 (MQ=255) tCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTc > 1:13747336/1‑101 (MQ=255) tCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTc < 1:11185267/101‑1 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCg > 1:3006430/1‑101 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:11440066/101‑1 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:552005/101‑1 (MQ=255) ctgGCGGACATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTAAATATCGATTTTTTGCTCGGCTa < 1:6121179/101‑1 (MQ=255) cGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTg < 1:3840893/101‑1 (MQ=255) cGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTg < 1:3088886/101‑1 (MQ=255) cGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTg < 1:6048684/101‑1 (MQ=255) ggAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGTATATCGATTTTTTGCTCGGCTATTTGa < 1:2292028/101‑1 (MQ=255) gagaTCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGaa > 1:933012/1‑101 (MQ=255) agaTCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGaaa < 1:9632573/101‑1 (MQ=255) gaTCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag < 1:5659244/101‑1 (MQ=255) gaTCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag < 1:7105528/101‑1 (MQ=255) aTCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAaga > 1:9689324/1‑101 (MQ=255) tCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAagag < 1:10941179/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt < 1:7456293/101‑1 (MQ=255) aGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtg > 1:9539460/1‑101 (MQ=255) cAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgct > 1:12642924/1‑101 (MQ=255) aaGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgctg > 1:4132329/1‑101 (MQ=255) gACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGcc > 1:10796120/1‑101 (MQ=255) aCCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcg < 1:12215007/101‑1 (MQ=255) ccGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgc > 1:2665460/1‑101 (MQ=255) cGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgcg > 1:6845397/1‑101 (MQ=255) cGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgcg < 1:6438843/101‑1 (MQ=255) ccTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggc < 1:1722569/101‑1 (MQ=255) ctgctg‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggcg < 1:5047408/101‑1 (MQ=255) gctg‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTc > 1:13597669/1‑101 (MQ=255) g‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTg > 1:8183926/1‑101 (MQ=255) | TTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑A‑TGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGA > NC_007779/1485239‑1485439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |