Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 1,485,842 C→G 3.2% T337T (ACC→ACG)  hrpA → ATP‑dependent helicase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077791,485,8420C→G 3.2% 11.5 ‑1.3 ‑0.0248T337T (ACC→ACG) hrpAATP‑dependent helicase
Reads supporting (aligned to +/- strand):  new base (6/2):  ref base (119/121):  total (125/123)
Fisher's exact test strand distribution p-value = 2.81e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.96e-01

Only 100 of 261 total aligned reads displayed.

TTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCC  >  NC_007779/1485742‑1485942
                                                                                                    |                                                                                                    
tttATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGAcc                                                                                                      >  1:1836800/1‑101 (MQ=255)
 ttATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCg                                                                                                     >  1:13710404/1‑101 (MQ=255)
    tGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTAc                                                                                                  >  1:12711968/1‑101 (MQ=255)
    tGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTAc                                                                                                  >  1:11875266/1‑101 (MQ=255)
    tGCGCGGCTTTCGAACAGCGAACAAAATAGGATATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTAc                                                                                                  <  1:9159861/101‑1 (MQ=255)
     gcgcGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTAcc                                                                                                 <  1:8237415/101‑1 (MQ=255)
      cgcgGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGCCCGTACCg                                                                                                >  1:1729572/1‑101 (MQ=255)
      cgcgGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCg                                                                                                >  1:6562714/1‑101 (MQ=255)
      cgcgGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCg                                                                                                <  1:9293973/101‑1 (MQ=255)
       gcgGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgg                                                                                               >  1:1098450/1‑101 (MQ=255)
       gcgGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCAACCAACGTCGCGGAAACGTCGCTGACCGTACCgg                                                                                               >  1:3134095/1‑101 (MQ=255)
         ggCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCgggg                                                                                             <  1:12010188/101‑1 (MQ=255)
             ttCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTa                                                                                         <  1:8748596/101‑1 (MQ=255)
              tCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTaa                                                                                        >  1:8389202/1‑101 (MQ=255)
                gAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAAt                                                                                      <  1:5911004/101‑1 (MQ=255)
                gAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAAt                                                                                      >  1:1578991/1‑101 (MQ=255)
                gAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAAt                                                                                      >  1:11348468/1‑101 (MQ=255)
                   cAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACg                                                                                   <  1:10018281/101‑1 (MQ=255)
                    aGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGt                                                                                  >  1:7844451/1‑101 (MQ=255)
                      cGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTa                                                                                <  1:3624099/101‑1 (MQ=255)
                      cGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTa                                                                                >  1:9355420/1‑101 (MQ=255)
                       gAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTAt                                                                               >  1:10089617/1‑101 (MQ=255)
                       gAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTAt                                                                               >  1:6296633/1‑101 (MQ=255)
                        aaCAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATc                                                                              <  1:13206823/101‑1 (MQ=255)
                        aaCAAAATAGGGTATTCCAGTCGCACAG‑GGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCg                                                                             <  1:2822621/101‑1 (MQ=255)
                          cAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGa                                                                            >  1:10744551/1‑101 (MQ=255)
                           aaaaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAc                                                                           <  1:8050470/101‑1 (MQ=255)
                            aaaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc                                                                          <  1:6492190/101‑1 (MQ=255)
                            aaaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc                                                                          >  1:10445144/1‑101 (MQ=255)
                            aaaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAcc                                                                          <  1:12422430/101‑1 (MQ=255)
                             aaTAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGAccc                                                                         >  1:4140610/1‑101 (MQ=255)
                               tAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCg                                                                       <  1:12813886/101‑1 (MQ=255)
                                aGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCgg                                                                      >  1:11661637/1‑101 (MQ=255)
                                 gggTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGt                                                                     <  1:5771390/101‑1 (MQ=255)
                                 gggTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGt                                                                     <  1:7611566/101‑1 (MQ=255)
                                  ggTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTa                                                                    <  1:6433100/101‑1 (MQ=255)
                                    tATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACa                                                                  >  1:11014972/1‑101 (MQ=255)
                                    tATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACa                                                                  <  1:10350528/101‑1 (MQ=255)
                                     cttcaccccGCACTCCGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGGGCCGGGTATTGAGTACGTCGTCGATACTGGTAccg                                                                 >  1:11104411/9‑99 (MQ=255)
                                      ttCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgc                                                                <  1:7889550/101‑1 (MQ=255)
                                       tCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAgcg                                                               <  1:13465615/101‑1 (MQ=255)
                                         cAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGcgcg                                                             >  1:6114475/1‑101 (MQ=255)
                                         cAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGcgcg                                                             <  1:13545492/101‑1 (MQ=255)
                                         accccGCACTCCGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGTGCCGGGTATTGAGTACGTCGTCGATACTGGTACCGcacg                                                             >  1:6177308/5‑101 (MQ=255)
                                           gTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTa                                                           <  1:3557231/101‑1 (MQ=255)
                                            ccGCACTCCGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGTGCCGGGTATTGAGTACGTCGTCGATACTGGTACCGCACGCAt                                                          >  1:4439303/2‑101 (MQ=255)
                                             cGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATc                                                         >  1:7704409/1‑101 (MQ=255)
                                              gCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATAGACCCCGGTACAGCGCGTATCa                                                        <  1:8857643/101‑1 (MQ=255)
                                               cacaGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAg                                                       <  1:9559850/101‑1 (MQ=255)
                                                actccGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGTGCCGGGTATTGAGTACGTCGTCGATACTGGTACCGCACGCAtttcc                                                      <  1:13036557/97‑5 (MQ=255)
                                                 ctccGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGTGCCGGGTATTGAGTACGTCGTCGATACTGGTACCGCACGCAtttccc                                                     >  1:7572820/4‑96 (MQ=255)
                                                 caGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGcc                                                     <  1:2201029/101‑1 (MQ=255)
                                                 caGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGcc                                                     <  1:11501607/101‑1 (MQ=255)
                                                 caGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGcc                                                     <  1:14178238/101‑1 (MQ=255)
                                                  tccGGGCGCCGCATTGTGCTGGCGACCAATATCGCGGAGACGTCGCTGACGGTGCCGGGTATTGAGTACGTCGTCGATACTGGTACCGCACGCAtttcccg                                                    >  1:7262170/3‑95 (MQ=255)
                                                   gCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGc                                                   <  1:6668376/101‑1 (MQ=255)
                                                   gCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGc                                                   >  1:3981053/1‑101 (MQ=255)
                                                   gCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGc                                                   <  1:5456602/101‑1 (MQ=255)
                                                     ggACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTa                                                 <  1:11959067/101‑1 (MQ=255)
                                                      gACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTAc                                                >  1:2282993/1‑101 (MQ=255)
                                                      gACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTAc                                                <  1:3502426/101‑1 (MQ=255)
                                                         ggCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGc                                             <  1:6252482/101‑1 (MQ=255)
                                                         ggCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGc                                             >  1:5887626/1‑101 (MQ=255)
                                                             cATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATc                                         <  1:306413/101‑1 (MQ=255)
                                                              aTTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCg                                        >  1:15639/1‑101 (MQ=255)
                                                                tgtgCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCa                                      <  1:4262573/101‑1 (MQ=255)
                                                                   gCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCa                                   >  1:4886433/1‑101 (MQ=255)
                                                                    cTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCaa                                  >  1:14051655/1‑101 (MQ=255)
                                                                     tGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCaaa                                 <  1:11475882/101‑1 (MQ=255)
                                                                     tGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCaaa                                 <  1:6965371/101‑1 (MQ=255)
                                                                      ggCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAg                                >  1:13644949/1‑101 (MQ=255)
                                                                       gCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACGGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGt                               <  1:9836266/101‑1 (MQ=255)
                                                                         gACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGc                             <  1:8779489/101‑1 (MQ=255)
                                                                         gACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGc                             <  1:4947237/101‑1 (MQ=255)
                                                                           ccAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAg                           >  1:9446329/1‑101 (MQ=255)
                                                                            cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGc                          <  1:8957543/101‑1 (MQ=255)
                                                                            cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGc                          <  1:11384022/101‑1 (MQ=255)
                                                                            cAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGc                          <  1:8555172/101‑1 (MQ=255)
                                                                             aaCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCATCCGCTACAGCTATCGCACCAAAGTGCAGCg                         >  1:4739120/1‑101 (MQ=255)
                                                                              aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGt                        <  1:12881623/101‑1 (MQ=255)
                                                                              aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGt                        <  1:4630883/101‑1 (MQ=255)
                                                                              aCGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGt                        <  1:2461890/101‑1 (MQ=255)
                                                                               cGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGtt                       >  1:7162172/1‑101 (MQ=255)
                                                                               cGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGtt                       >  1:11267105/1‑101 (MQ=255)
                                                                                gTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGttt                      >  1:12096095/1‑101 (MQ=255)
                                                                                  cgcgGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGc                    <  1:6595008/101‑1 (MQ=255)
                                                                                    cgGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCg                  >  1:3988556/1‑101 (MQ=255)
                                                                                     ggAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGa                 >  1:12499565/1‑101 (MQ=255)
                                                                                      gAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGAt                <  1:1961832/101‑1 (MQ=255)
                                                                                        aaCGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTg              >  1:4558464/1‑101 (MQ=255)
                                                                                         aCGTCGCTGACGGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGa             <  1:11367350/101‑1 (MQ=255)
                                                                                           gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGc           <  1:13125832/101‑1 (MQ=255)
                                                                                           gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGc           >  1:2676143/1‑101 (MQ=255)
                                                                                           gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGc           >  1:5970892/1‑101 (MQ=255)
                                                                                           gTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGc           >  1:13843178/1‑101 (MQ=255)
                                                                                             cGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCg         <  1:11530790/101‑1 (MQ=255)
                                                                                                 gACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGAttt     <  1:5126208/101‑1 (MQ=255)
                                                                                                  aCCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTc    >  1:1221495/1‑101 (MQ=255)
                                                                                                  aCCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTc    >  1:12166698/1‑101 (MQ=255)
                                                                                                  aCCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTc    <  1:14316959/101‑1 (MQ=255)
                                                                                                    |                                                                                                    
TTTATGCGCGGCTTTCGAACAGCGAACAAAATAGGGTATTCCAGTCGCACAGCGGACGGCGCATTGTGCTGGCGACCAACGTCGCGGAAACGTCGCTGACCGTACCGGGGATTAAATACGTTATCGACCCCGGTACAGCGCGTATCAGCCGCTACAGCTATCGCACCAAAGTGCAGCGTTTGCCGATTGAGCCGATTTCCC  >  NC_007779/1485742‑1485942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.