Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 2,731,786 C→G 14.0% A348A (GCG→GCC clpB ← protein disaggregation chaperone

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077792,731,7860C→G14.0% 125.5 ‑1.8 ‑0.0291A348A (GCG→GCCclpBprotein disaggregation chaperone
Reads supporting (aligned to +/- strand):  new base (19/22):  ref base (147/103):  total (166/125)
Fisher's exact test strand distribution p-value = 1.73e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.96e-01

Only 100 of 300 total aligned reads displayed.

CAATGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCAAGCG  >  NC_007779/2731686‑2731886
                                                                                                    |                                                                                                    
cAATGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATc                                                                                                      <  1:9895391/101‑1 (MQ=255)
cAATGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATc                                                                                                      <  1:5489839/101‑1 (MQ=255)
cAATGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATc                                                                                                      >  1:3627937/1‑101 (MQ=255)
  aTGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGc                                                                                                    >  1:13943047/1‑101 (MQ=255)
  aTGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGc                                                                                                    >  1:5140625/1‑101 (MQ=255)
      aGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATg                                                                                                >  1:845447/1‑101 (MQ=255)
      aGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATg                                                                                                >  1:11782411/1‑101 (MQ=255)
      aGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATg                                                                                                <  1:13710852/101‑1 (MQ=255)
        cGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGt                                                                                              >  1:1033944/1‑101 (MQ=255)
        cGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGt                                                                                              >  1:10224506/1‑101 (MQ=255)
        cGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGt                                                                                              <  1:13144912/101‑1 (MQ=255)
         gATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTa                                                                                             <  1:6688131/101‑1 (MQ=255)
          aTGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTAt                                                                                            <  1:10709349/101‑1 (MQ=255)
           tGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATc                                                                                           >  1:10628426/1‑101 (MQ=255)
              gaCAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTc                                                                                        >  1:5847233/1‑101 (MQ=255)
               agaaCGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCa                                                                                       <  1:455851/99‑1 (MQ=255)
                    gTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGa                                                                                  <  1:6516357/101‑1 (MQ=255)
                     tCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGaa                                                                                 <  1:368891/101‑1 (MQ=255)
                       gccgcTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAgg                                                                               >  1:3126014/1‑101 (MQ=255)
                             gCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGc                                                                         <  1:2455272/101‑1 (MQ=255)
                              caacaaTTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGGAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGca                                                                        >  1:2759446/1‑101 (MQ=255)
                                  aaTTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGcaacaa                                                                    <  1:2374834/101‑1 (MQ=255)
                                    ttGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCaacaaac                                                                  >  1:7148252/1‑101 (MQ=255)
                                     tGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCaacaaaca                                                                 >  1:7611319/1‑101 (MQ=255)
                                     tGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCaacaaaca                                                                 >  1:3761198/1‑101 (MQ=255)
                                      gCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAacac                                                                >  1:7457318/1‑101 (MQ=255)
                                       ccGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACt                                                               >  1:6636257/1‑101 (MQ=255)
                                        cGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACtt                                                              <  1:6198307/101‑1 (MQ=255)
                                          ggTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTc                                                            <  1:5926174/101‑1 (MQ=255)
                                            tCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTg                                                          >  1:9190915/1‑101 (MQ=255)
                                             cAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTgg                                                         >  1:13203256/1‑101 (MQ=255)
                                             cAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTgg                                                         >  1:6955916/1‑101 (MQ=255)
                                             cAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTgg                                                         >  1:574261/1‑101 (MQ=255)
                                              aGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGa                                                        <  1:2084153/101‑1 (MQ=255)
                                              aGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGa                                                        >  1:12564178/1‑101 (MQ=255)
                                               gTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGaa                                                       >  1:5324455/1‑101 (MQ=255)
                                                tAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGaaa                                                      >  1:7775940/1‑101 (MQ=255)
                                                 aaTTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAac                                                     >  1:4703701/1‑101 (MQ=255)
                                                  aTTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacg                                                    <  1:14205463/101‑1 (MQ=255)
                                                  aTTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacg                                                    >  1:5410675/1‑101 (MQ=255)
                                                  aTTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacg                                                    <  1:13258546/101‑1 (MQ=255)
                                                   tttGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacga                                                   >  1:7110752/1‑101 (MQ=255)
                                                   tttGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacga                                                   >  1:9418972/1‑101 (MQ=255)
                                                    ttGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacgac                                                  >  1:1628668/1‑101 (MQ=255)
                                                     tGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAacgacg                                                 >  1:8230224/1‑101 (MQ=255)
                                                        acaTGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTc                                              >  1:11683933/1‑101 (MQ=255)
                                                        acaTGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTc                                              <  1:899012/101‑1 (MQ=255)
                                                          accgtggtgGACCTCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCa                                            <  1:5249196/98‑1 (MQ=255)
                                                          aTGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCa                                            >  1:3935330/1‑101 (MQ=255)
                                                            cgtggtgGACCTCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAgc                                          >  1:2273036/2‑101 (MQ=255)
                                                            cgtggtgGACCTCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAgc                                          <  1:1899007/100‑1 (MQ=255)
                                                             gtggtgGACCTCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAgcg                                         >  1:1531659/1‑101 (MQ=255)
                                                             gtggtgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAgcg                                         <  1:3418753/101‑1 (MQ=255)
                                                              tggtgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAgcgc                                        >  1:5895960/1‑101 (MQ=255)
                                                              tggtgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAgcgc                                        >  1:4330532/1‑101 (MQ=255)
                                                               ggtgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCgca                                       <  1:3184519/101‑1 (MQ=255)
                                                               ggtgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCgca                                       >  1:2654497/1‑101 (MQ=255)
                                                                 tgCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCgcagc                                     >  1:11797320/1‑101 (MQ=255)
                                                                   gacctCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCAt                                   <  1:4620616/97‑1 (MQ=255)
                                                                   cAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCAt                                   >  1:8632503/1‑101 (MQ=255)
                                                                   cAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCAt                                   >  1:978595/1‑101 (MQ=255)
                                                                    aaTTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATc                                  <  1:8325377/101‑1 (MQ=255)
                                                                     cctCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATcc                                 >  1:4064608/3‑100 (MQ=255)
                                                                      ttCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCtt                                <  1:2830948/101‑1 (MQ=255)
                                                                      ctCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATcct                                >  1:12101400/2‑99 (MQ=255)
                                                                      ctCGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATcct                                >  1:7377120/2‑99 (MQ=255)
                                                                       tCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCttt                               >  1:11456127/1‑101 (MQ=255)
                                                                       tCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCttt                               >  1:14002125/1‑101 (MQ=255)
                                                                        cGTAGCGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATCcttc                              <  1:12159048/101‑2 (MQ=255)
                                                                         gTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCttttt                             >  1:8697064/1‑101 (MQ=255)
                                                                         gTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCttttt                             >  1:4380081/1‑101 (MQ=255)
                                                                         gTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCttttt                             >  1:4215552/1‑101 (MQ=255)
                                                                          tAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTc                            <  1:6408204/101‑1 (MQ=255)
                                                                           agcGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATCCTTCTcg                           <  1:10995276/99‑2 (MQ=255)
                                                                           aaCGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCa                           >  1:750472/1‑101 (MQ=255)
                                                                           aaCGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCa                           >  1:14244879/1‑101 (MQ=255)
                                                                            gcGTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATCCTTCTcga                          <  1:5058185/100‑3 (MQ=255)
                                                                            aCGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCaa                          <  1:3267768/101‑1 (MQ=255)
                                                                             cGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAGACGACGTTCCAGCGCAGCATCTTTTTCaaa                         <  1:7533153/101‑2 (MQ=255)
                                                                              gTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATg                        <  1:258664/101‑1 (MQ=255)
                                                                              gTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATg                        >  1:4980026/1‑101 (MQ=255)
                                                                              gTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATg                        >  1:6143912/1‑101 (MQ=255)
                                                                              gTTCCTTCAGGCCACGCAGAATGCCAATGGCGTCCTCAACGCTCGGCTCACCGACAAAGACCTGCTGGAAACGACGCTCCAGCGCAGCATCCTTCTCGATg                        <  1:10270293/101‑1 (MQ=255)
                                                                               ttCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGt                       >  1:12331863/1‑101 (MQ=255)
                                                                                tCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTa                      >  1:12879510/1‑101 (MQ=255)
                                                                                tCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAAGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTa                      >  1:820635/1‑101 (MQ=255)
                                                                                 cTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTAc                     >  1:11514707/1‑101 (MQ=255)
                                                                                    tCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTgg                  <  1:11195669/101‑1 (MQ=255)
                                                                                    tCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTgg                  >  1:9094090/1‑101 (MQ=255)
                                                                                    tCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTgg                  <  1:8158257/101‑1 (MQ=255)
                                                                                     cAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGc                 >  1:11590043/1‑101 (MQ=255)
                                                                                      aGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCg                <  1:4282700/101‑1 (MQ=255)
                                                                                      aGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCg                <  1:1349123/101‑1 (MQ=255)
                                                                                           aCGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTGAATGTACTGGCGATAtt           >  1:10108938/1‑101 (MQ=255)
                                                                                             gCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCg         >  1:5632687/1‑101 (MQ=255)
                                                                                               aGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTc       <  1:12017263/101‑1 (MQ=255)
                                                                                                gAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCa      >  1:799992/1‑101 (MQ=255)
                                                                                                 aaTCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCaa     <  1:12699822/101‑1 (MQ=255)
                                                                                                  aTCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCAAg    <  1:13886380/101‑1 (MQ=255)
                                                                                                    cGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCAAGcg  <  1:680691/101‑1 (MQ=255)
                                                                                                    |                                                                                                    
CAATGTAGCGATGAGACAACGTCGCCGCTGCAACAATTGCCGGGTCAGTAATTTGCACATGGTGGTGCAATTCGTAACGTTCTTTCAGGCCACGCAGAATCGCAATGGTATCTTCAACAGAAGGCTCGGCAACAAACACTTTCTGGAAACGACGTTCCAGCGCAGCATCTTTTTCAATGTACTGGCGATATTCGTCAAGCG  >  NC_007779/2731686‑2731886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.