| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,690,719 | A→C | 7.7% | noncoding (2259/2904 nt) | rrlC ← | 23S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,690,719 | 0 | A→C | 7.7% | 28.3 ‑1.0 ‑0.2 | 147 | noncoding (2259/2904 nt) | rrlC | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (3/9): ref base (54/81): total (57/90) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.70e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.72e-01 | ||||||||||
Only 100 of 164 total aligned reads displayed.
TGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC > NC_007779/3690667‑3690819 | tGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATc < 1:10603409/101‑1 (MQ=11)tGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATc < 1:11351805/101‑1 (MQ=11) tgccaaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACTCGGATCa > 1:624377/6‑101 (MQ=2) gTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCACCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCa > 1:698724/1‑101 (MQ=14) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:12692953/101‑1 (MQ=32) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:5899676/101‑1 (MQ=32) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc > 1:10701177/1‑101 (MQ=32) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:13197022/101‑1 (MQ=32) gccaaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCAc < 1:4801809/97‑1 (MQ=2) gccaaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCAc < 1:2875789/97‑1 (MQ=2) gccaaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCAc < 1:11083907/97‑1 (MQ=2) ccGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACGCTGTCCGCAACCCGGATCACg > 1:12230546/1‑101 (MQ=17) ccGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACg < 1:13814883/101‑1 (MQ=32) caaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACgg > 1:4760728/3‑101 (MQ=2) cGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACgg > 1:11600471/1‑101 (MQ=32) gACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACggg < 1:14184396/101‑1 (MQ=32) aaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACggg < 1:11392411/100‑1 (MQ=2) aaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACggg < 1:11282016/100‑1 (MQ=2) aaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACggg < 1:2132112/100‑1 (MQ=2) ccAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACggggc > 1:9625322/1‑99 (MQ=17) ccAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTc > 1:2580015/1‑101 (MQ=32) cAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTcc < 1:9055766/101‑1 (MQ=33) aGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTccc > 1:6736287/1‑100 (MQ=18) aGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCa < 1:1977420/101‑1 (MQ=34) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:24118/101‑1 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc > 1:9909284/1‑101 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:10806971/101‑1 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:11669485/101‑1 (MQ=35) aTTAGCCAACCTTCGTGCTCCTCCGTTCCTCTTTAGGAGGAGACCGCCCCAGTCAAACTTCCCCCCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:2697860/101‑1 (MQ=255) aTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:8916525/101‑1 (MQ=35) aTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt > 1:13494670/1‑101 (MQ=35) aTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTGAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:7643929/101‑1 (MQ=25) ttAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGtt < 1:11483906/101‑1 (MQ=37) tAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGGCCGACCCAGTCAAACTACCCACCAGACACTATCTGCAACCCGGATCACGGGACCACGTTa > 1:13813698/1‑101 (MQ=11) tAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTa > 1:2087600/1‑101 (MQ=35) gCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGa < 1:10030795/101‑1 (MQ=37) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa > 1:11590181/1‑101 (MQ=35) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa < 1:7874073/101‑1 (MQ=35) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa < 1:8079234/101‑1 (MQ=37) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa < 1:11841460/101‑1 (MQ=35) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa > 1:6193739/1‑101 (MQ=35) cAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc > 1:13301946/1‑101 (MQ=35) cAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc < 1:5190063/101‑1 (MQ=35) cAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc < 1:8674723/101‑1 (MQ=37) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:4326087/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:3652769/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:2875458/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:14035885/1‑101 (MQ=35) aCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACAt < 1:12776279/101‑1 (MQ=37) ccTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATc > 1:13045590/1‑101 (MQ=35) ccTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATc < 1:902233/101‑1 (MQ=38) cTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCa < 1:7763592/101‑1 (MQ=37) cTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCa > 1:4886280/1‑101 (MQ=35) ttCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaa > 1:7391111/1‑101 (MQ=35) cGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc < 1:397650/101‑1 (MQ=35) cGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc < 1:6937137/101‑1 (MQ=35) cGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc > 1:1855895/1‑101 (MQ=35) gTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACa < 1:9172778/101‑1 (MQ=38) gTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACa < 1:12138271/101‑1 (MQ=38) tGCTCCTCCGTTACTCTTTAGGAGGAGGCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAt < 1:507380/101‑1 (MQ=37) tGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAt < 1:14324521/101‑1 (MQ=35) gCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAtt < 1:13670479/101‑1 (MQ=37) tcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa > 1:4427550/1‑101 (MQ=35) tcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa < 1:12034573/101‑1 (MQ=37) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTGCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa < 1:3394639/101‑1 (MQ=25) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:3479038/1‑101 (MQ=35) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:3518477/1‑101 (MQ=35) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:5774311/1‑101 (MQ=35) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa < 1:11926115/101‑1 (MQ=35) ctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAg < 1:5469414/101‑1 (MQ=37) tccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg > 1:7286301/1‑101 (MQ=35) tccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg > 1:10237729/1‑101 (MQ=35) ccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAggg < 1:566828/101‑1 (MQ=35) cGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggt > 1:5307556/1‑101 (MQ=35) gTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg < 1:4847172/101‑1 (MQ=38) gTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg < 1:10238713/101‑1 (MQ=38) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:12861085/1‑101 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg < 1:3161151/101‑1 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:948270/1‑101 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACAGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:5581237/1‑101 (MQ=25) tACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtggt > 1:4940399/1‑101 (MQ=35) tACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtggt < 1:10414489/101‑1 (MQ=38) aCTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa < 1:10021071/101‑1 (MQ=35) ctctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAt < 1:13233896/101‑1 (MQ=38) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:2573595/101‑1 (MQ=35) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:1994992/101‑1 (MQ=35) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:8443708/101‑1 (MQ=38) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:7892741/101‑1 (MQ=38) tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa > 1:605285/1‑101 (MQ=35) tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa < 1:6126963/101‑1 (MQ=35) ggaggaGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAgg > 1:7609444/1‑101 (MQ=35) gaggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:12924950/1‑101 (MQ=35) gaggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGt > 1:10650819/1‑101 (MQ=35) aggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTc < 1:4042702/101‑1 (MQ=37) ggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:10944012/101‑1 (MQ=38) ggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:2947801/101‑1 (MQ=37) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg < 1:4457503/101‑1 (MQ=37) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg < 1:1351819/101‑1 (MQ=37) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGG‑CCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGc < 1:11255042/101‑1 (MQ=25) agaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGc < 1:12510624/101‑1 (MQ=37) | TGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGC > NC_007779/3690667‑3690819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |