| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,690,747 | A→G | 5.1% | noncoding (2231/2904 nt) | rrlC ← | 23S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,690,747 | 0 | A→G | 5.1% | 21.2 ‑1.0 ‑1.5 | 229 | noncoding (2231/2904 nt) | rrlC | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (3/9): ref base (88/129): total (91/138) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.72e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.12e-02 | ||||||||||
Only 100 of 232 total aligned reads displayed.
TGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAA > NC_007779/3690667‑3690847 | tGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATc < 1:10603409/101‑1 (MQ=11) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:13197022/101‑1 (MQ=32) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:12263441/101‑1 (MQ=32) tCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCAc < 1:11761384/101‑1 (MQ=32) caaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACgg > 1:4760728/3‑101 (MQ=2) cGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACgg > 1:11600471/1‑101 (MQ=32) gACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACggg < 1:14184396/101‑1 (MQ=32) aaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACggg < 1:4993576/100‑1 (MQ=2) aaCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCTAACCCGGATCACggg < 1:9429745/100‑1 (MQ=2) aCCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGt < 1:11468777/101‑1 (MQ=32) ccAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACggggc > 1:9625322/1‑99 (MQ=17) ccAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTc > 1:2580015/1‑101 (MQ=32) cAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGACCGCAACCCGGATCACGGGTcc > 1:5672622/1‑101 (MQ=18) aGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTccc > 1:6736287/1‑100 (MQ=18) aGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCa < 1:1977420/101‑1 (MQ=34) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:13247630/101‑1 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:11484198/101‑1 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc > 1:9909284/1‑101 (MQ=35) ggATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCAc < 1:10806971/101‑1 (MQ=35) gATTAGCCACCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTCCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACg < 1:11321058/101‑1 (MQ=255) aTTAGCCAACCTTCGTGCTCCTCCGTTCCTCTTTAGGAGGAGACCGCCCCAGTCAAACTTCCCCCCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt < 1:2697860/101‑1 (MQ=255) aTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGt > 1:11242962/1‑101 (MQ=35) tAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGGCCGACCCAGTCAAACTACCCACCAGACACTATCTGCAACCCGGATCACGGGACCACGTTa > 1:13813698/1‑101 (MQ=11) tAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTa > 1:2087600/1‑101 (MQ=35) gCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGa < 1:5451100/101‑1 (MQ=37) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa < 1:10159659/101‑1 (MQ=37) ccAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGaa > 1:6193739/1‑101 (MQ=35) cAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAAc < 1:12812611/101‑1 (MQ=37) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:4326087/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:3652769/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:2875458/1‑101 (MQ=35) aaCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACa > 1:14035885/1‑101 (MQ=35) aCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACAt > 1:2881165/1‑101 (MQ=35) aCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACAt < 1:12776279/101‑1 (MQ=37) aCCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACAt < 1:11974329/101‑1 (MQ=37) ccTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATc < 1:902233/101‑1 (MQ=38) ccTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATc > 1:13045590/1‑101 (MQ=35) cTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCa > 1:4886280/1‑101 (MQ=35) ttCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaa < 1:13365226/101‑1 (MQ=38) tCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaaa < 1:5807047/101‑1 (MQ=35) tCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCaaa < 1:5149445/101‑1 (MQ=38) cGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc < 1:397650/101‑1 (MQ=35) cGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAAc < 1:6937137/101‑1 (MQ=35) gTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACa < 1:12138271/101‑1 (MQ=38) tGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAt < 1:14324521/101‑1 (MQ=35) tGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACAt < 1:6427863/101‑1 (MQ=37) ctcctcCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTa < 1:3436373/101‑1 (MQ=35) tcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa < 1:4806705/101‑1 (MQ=38) tcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa > 1:4427550/1‑101 (MQ=35) tcctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaa < 1:13708530/101‑1 (MQ=38) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:7619067/1‑101 (MQ=35) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa > 1:3518477/1‑101 (MQ=35) cctccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTaaa < 1:11926115/101‑1 (MQ=35) tccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAgg > 1:7286301/1‑101 (MQ=35) cGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggt > 1:5307556/1‑101 (MQ=35) gTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtg < 1:10238713/101‑1 (MQ=38) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:9062339/1‑101 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:8819242/1‑101 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg < 1:3161151/101‑1 (MQ=35) ttACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACAGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGggtgg > 1:5581237/1‑101 (MQ=25) aCTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa < 1:10021071/101‑1 (MQ=35) aCTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTa > 1:2440240/1‑101 (MQ=35) tctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTAtt > 1:13870298/1‑101 (MQ=35) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:7892741/101‑1 (MQ=38) ttAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCa < 1:8443708/101‑1 (MQ=38) tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa < 1:6126963/101‑1 (MQ=35) tAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCaa > 1:605285/1‑101 (MQ=35) ggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCg < 1:10664737/101‑1 (MQ=37) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg < 1:8147290/101‑1 (MQ=38) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg < 1:13025680/101‑1 (MQ=35) gagaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCgg < 1:1351819/101‑1 (MQ=37) gaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:7778965/101‑1 (MQ=38) gaCCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCt < 1:10368996/101‑1 (MQ=38) gCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt > 1:3208300/1‑101 (MQ=37) gCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAt > 1:6951938/1‑101 (MQ=35) ccccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATg < 1:1822547/101‑1 (MQ=38) cccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGc < 1:2000506/101‑1 (MQ=37) cccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGc > 1:7527269/1‑101 (MQ=37) ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCa < 1:2270848/101‑1 (MQ=37) ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCa < 1:12675544/101‑1 (MQ=37) ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCa > 1:8591109/1‑101 (MQ=37) cAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCAATGCAg < 1:8092519/101‑1 (MQ=37) gTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGAc > 1:7751535/1‑101 (MQ=37) cAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTg < 1:9102254/101‑1 (MQ=35) aaaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTgg > 1:12892515/1‑101 (MQ=38) aaCTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGc > 1:11011418/1‑101 (MQ=37) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt > 1:1093551/1‑101 (MQ=38) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt < 1:7802877/101‑1 (MQ=35) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt > 1:11259707/1‑101 (MQ=35) cTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGt < 1:4259704/101‑1 (MQ=35) aCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTcc > 1:864190/1‑101 (MQ=38) aCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTcc < 1:4540936/101‑1 (MQ=35) aCCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTcc > 1:10549560/1‑101 (MQ=38) ccaccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcac > 1:12443636/1‑101 (MQ=37) ccaccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcac < 1:7062878/101‑1 (MQ=35) ccaccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcac > 1:2608788/1‑101 (MQ=38) ccaccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcac > 1:4882349/1‑101 (MQ=37) caccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGAGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCcaca > 1:7189074/1‑101 (MQ=25) accaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCacac < 1:4093848/101‑1 (MQ=35) ccaGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACt > 1:1615585/1‑101 (MQ=38) | TGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATCACGGGTCCACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCAA > NC_007779/3690667‑3690847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |