Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 3,717,908 C→A 9.5% A362D (GCC→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,717,9080C→A 9.5% 56.8 ‑3.7 ‑0.0273A362D (GCC→GAC) atpAF1 sector of membrane‑bound ATP synthase subunit alpha
Reads supporting (aligned to +/- strand):  new base (7/19):  ref base (124/122):  total (131/142)
Fisher's exact test strand distribution p-value = 2.43e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01

Only 100 of 279 total aligned reads displayed.

ATTATCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCGGTGGTATCCGTACC  >  NC_007779/3717808‑3718008
                                                                                                    |                                                                                                    
   aTCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCgg                                                                                                   <  1:6839418/101‑1 (MQ=255)
   aTCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCgg                                                                                                   <  1:6649848/101‑1 (MQ=255)
   aTCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCgg                                                                                                   <  1:3849194/101‑1 (MQ=255)
    tCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGt                                                                                                  <  1:5971238/101‑1 (MQ=255)
    acGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGt                                                                                                  <  1:3453638/100‑1 (MQ=255)
      gAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTAt                                                                                                >  1:10481093/1‑101 (MQ=255)
       aaaCTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTAtt                                                                                               <  1:953910/101‑1 (MQ=255)
       aaaCTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTAtt                                                                                               >  1:2667232/1‑101 (MQ=255)
       aaaCTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTAtt                                                                                               >  1:13702476/1‑101 (MQ=255)
       aaaCGCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTAtt                                                                                               <  1:7347350/101‑1 (MQ=255)
        aaCTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTc                                                                                              <  1:10598177/101‑1 (MQ=255)
         aCTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCg                                                                                             <  1:1855695/101‑1 (MQ=255)
             aGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCt                                                                                         >  1:11377270/1‑101 (MQ=255)
             aGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTAAACGCCGGTATTCGTCCt                                                                                         <  1:12646437/101‑1 (MQ=255)
                cGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCg                                                                                      <  1:8881551/101‑1 (MQ=255)
                    tGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTa                                                                                  >  1:11563611/1‑101 (MQ=255)
                    tGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTa                                                                                  <  1:11096011/101‑1 (MQ=255)
                    tGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTa                                                                                  >  1:4745628/1‑101 (MQ=255)
                     gACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTaa                                                                                 >  1:8246247/1‑101 (MQ=255)
                     gACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTaa                                                                                 <  1:5431172/101‑1 (MQ=255)
                      aCGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAAc                                                                                <  1:12277092/101‑1 (MQ=255)
                       cGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAAcc                                                                               >  1:159154/1‑101 (MQ=255)
                       cGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAAcc                                                                               >  1:14025746/1‑101 (MQ=255)
                          ttCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCgg                                                                            >  1:14225763/1‑101 (MQ=255)
                           tCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCggg                                                                           <  1:132763/101‑1 (MQ=255)
                           tCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCggg                                                                           <  1:12721407/101‑1 (MQ=255)
                             tGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTa                                                                         <  1:10338141/101‑1 (MQ=255)
                              gCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTAt                                                                        >  1:13098623/1‑101 (MQ=255)
                                gttcgttcCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTAttt                                                                      >  1:5154490/1‑101 (MQ=255)
                                 ttcgttcCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTc                                                                     <  1:1196346/101‑1 (MQ=255)
                                  tcgttcCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTcc                                                                    >  1:13200514/1‑101 (MQ=255)
                                    gttcCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCTACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGt                                                                  <  1:8504474/101‑1 (MQ=255)
                                      tcCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTAt                                                                >  1:10746477/1‑101 (MQ=255)
                                        cGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATcc                                                              >  1:7906844/1‑101 (MQ=255)
                                         gACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATccc                                                             >  1:12216431/1‑101 (MQ=255)
                                         gACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATccc                                                             >  1:6450103/1‑101 (MQ=255)
                                           ccAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCgt                                                           >  1:5223949/1‑101 (MQ=255)
                                            cAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAGCGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCgtg                                                          <  1:7724735/101‑1 (MQ=255)
                                            cAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCgtg                                                          >  1:4700020/1‑101 (MQ=255)
                                             aaCGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCgtgt                                                         >  1:8614837/1‑101 (MQ=255)
                                               cGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtg                                                       >  1:5836834/1‑101 (MQ=255)
                                                 tAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtggt                                                     <  1:9715342/101‑1 (MQ=255)
                                                 tAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtggt                                                     >  1:7386941/1‑101 (MQ=255)
                                                 tAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtggt                                                     >  1:3014612/1‑101 (MQ=255)
                                                 tAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtggt                                                     <  1:11636668/101‑1 (MQ=255)
                                                   aTCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTtggtgg                                                   <  1:3392960/101‑1 (MQ=255)
                                                    tctcCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTggtggt                                                  <  1:1348773/101‑1 (MQ=255)
                                                        cATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTgcag                                              >  1:10737066/1‑101 (MQ=255)
                                                        cATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTgcag                                              <  1:4380277/101‑1 (MQ=255)
                                                        cATTACCGACGGCCAGGTCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTgccg                                              >  1:9365941/1‑99 (MQ=255)
                                                         aTTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTgcagc                                             >  1:7166488/1‑101 (MQ=255)
                                                         aTTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTgcagc                                             <  1:12005869/101‑1 (MQ=255)
                                                            aCCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGcaca                                          <  1:9192540/101‑1 (MQ=255)
                                                            aCCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGcaca                                          <  1:8298219/101‑1 (MQ=255)
                                                             ccGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAg                                         >  1:1187119/1‑101 (MQ=255)
                                                              cGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGa                                        >  1:2107995/1‑101 (MQ=255)
                                                               gATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGAc                                       >  1:6983091/1‑101 (MQ=255)
                                                               gATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGAc                                       >  1:2244066/1‑101 (MQ=255)
                                                                gcggccAGGTCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGAcc                                      <  1:3575893/96‑1 (MQ=255)
                                                                acggccAGGTCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGAcc                                      <  1:2892310/96‑1 (MQ=255)
                                                                acggccAGGTCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGAcc                                      <  1:4542583/96‑1 (MQ=255)
                                                                acggccAGGTCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGAcc                                      <  1:4033931/96‑1 (MQ=255)
                                                                 tGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCGGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCa                                     >  1:10196750/1‑101 (MQ=255)
                                                                 tGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCATCACAGACCa                                     >  1:9294249/1‑101 (MQ=255)
                                                                   gTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAg                                   >  1:1141379/1‑101 (MQ=255)
                                                                   gTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAg                                   <  1:6827483/101‑1 (MQ=255)
                                                                     cAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGAt                                 <  1:1984428/101‑1 (MQ=255)
                                                                      agttCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATc                                <  1:246934/98‑1 (MQ=255)
                                                                      aggtCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAgggc                                <  1:5512184/98‑4 (MQ=255)
                                                                      aGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATc                                <  1:2041771/101‑1 (MQ=255)
                                                                        gtCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAgggcat                              <  1:10048400/100‑6 (MQ=255)
                                                                         tCTTCCTCGAGTCCGACCTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAGGGCATg                             <  1:12159348/101‑1 (MQ=255)
                                                                              cTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGaaaaa                        >  1:13532391/1‑101 (MQ=255)
                                                                              cTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGaaaaa                        >  1:1644308/1‑101 (MQ=255)
                                                                              cTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGaaaaa                        >  1:10095519/1‑101 (MQ=255)
                                                                               tGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGaaaaaa                       >  1:13793277/1‑101 (MQ=255)
                                                                                ggAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAAc                      <  1:6034196/101‑1 (MQ=255)
                                                                                 gAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACt                     >  1:660982/1‑101 (MQ=255)
                                                                                  agtccgaccTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAGGGCATGaagaaggtt                    <  1:1168569/95‑5 (MQ=255)
                                                                                  aaaCCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTg                    >  1:3134200/1‑101 (MQ=255)
                                                                                  aaaCCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTg                    >  1:6296643/1‑101 (MQ=255)
                                                                                  aaaCCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTg                    >  1:10884799/1‑101 (MQ=255)
                                                                                   aaccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGt                   <  1:8061961/101‑1 (MQ=255)
                                                                                   aaccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGt                   <  1:10255107/101‑1 (MQ=255)
                                                                                   aaccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGt                   <  1:1148876/101‑1 (MQ=255)
                                                                                     ccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTcc                 >  1:8919893/1‑101 (MQ=255)
                                                                                     ccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTcc                 >  1:13925645/1‑101 (MQ=255)
                                                                                     ccaaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTcc                 >  1:11878000/1‑101 (MQ=255)
                                                                                      cgaccTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAGGGCATGaagaaggtttccg                <  1:4643536/99‑9 (MQ=255)
                                                                                       gaccTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAGGGCATGAAGAAGGTTTCCgg               >  1:320692/2‑101 (MQ=255)
                                                                                       aaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCgg               <  1:7053952/101‑1 (MQ=255)
                                                                                       aaccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCgg               >  1:8681275/1‑101 (MQ=255)
                                                                                         ccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCggtg             <  1:9904636/101‑1 (MQ=255)
                                                                                         ccTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCggtg             <  1:4924554/101‑1 (MQ=255)
                                                                                         ccTGTTCAACCAGGGTGTCCGCCCGGCTATTAACGTCGGTGTGTCGGTTTCCCGTGTTGGTGGTGCCGCACAGACCAAGGGCATGAAGAAGGTTTCCggta             <  1:4784198/101‑2 (MQ=255)
                                                                                          cTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCggtgg            <  1:10000933/101‑1 (MQ=255)
                                                                                           tGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCggtggt           <  1:7290388/101‑1 (MQ=255)
                                                                                           tGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCggtggt           <  1:5776762/101‑1 (MQ=255)
                                                                                                   gCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCGGTGGTATCCGTAc   >  1:7828824/1‑101 (MQ=255)
                                                                                                    ccGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCGGTGGTATCCGTAcc  >  1:10410566/1‑101 (MQ=255)
                                                                                                    |                                                                                                    
ATTATCGAAACTCAGGCGGGTGACGTTTCTGCGTTCGTTCCGACCAACGTAATCTCCATTACCGATGGTCAGATCTTCCTGGAAACCAACCTGTTCAACGCCGGTATTCGTCCTGCGGTTAACCCGGGTATTTCCGTATCCCGTGTTGGTGGTGCAGCACAGACCAAGATCATGAAAAAACTGTCCGGTGGTATCCGTACC  >  NC_007779/3717808‑3718008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.