| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,892 | T→A | 26.3% | noncoding (1122/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,892 | 0 | T→A | 26.3% | 277.8 ‑1.5 ‑0.7 | 300 | noncoding (1122/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (50/29): ref base (122/99): total (172/128) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.34e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.83e-01 | ||||||||||
Only 100 of 323 total aligned reads displayed.
TGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224792‑224990 | gTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTttg > 1:12791723/1‑101 (MQ=37) tGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTttgt > 1:6075243/1‑101 (MQ=37) tGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTttgt > 1:11089062/1‑101 (MQ=37) gCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTttgtt < 1:2407555/101‑1 (MQ=35) ccTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTttgttg < 1:4246580/101‑1 (MQ=35) cTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGc < 1:7870587/101‑1 (MQ=35) cTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGc < 1:7134929/101‑1 (MQ=35) cTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGc > 1:2263640/1‑101 (MQ=35) tCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCa > 1:9635677/1‑101 (MQ=35) gggAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGc < 1:8384616/101‑1 (MQ=35) gggAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGc > 1:7458765/1‑101 (MQ=35) gggAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGc > 1:3265011/1‑101 (MQ=35) gggAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGc > 1:10000507/1‑101 (MQ=35) gAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑g‑g > 1:4143769/1‑101 (MQ=35) gAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑g‑g < 1:647435/101‑1 (MQ=37) aaCTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑Gt < 1:8484808/101‑1 (MQ=37) aaCTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑Gt > 1:13344157/1‑101 (MQ=35) aCTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTc < 1:12450844/101‑1 (MQ=35) gagaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTccggcc > 1:2522381/1‑101 (MQ=32) gagaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTccggcc < 1:11356984/101‑1 (MQ=33) aCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCggg < 1:478853/101‑1 (MQ=33) cAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGa < 1:8869512/101‑1 (MQ=33) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACt < 1:2569690/101‑1 (MQ=33) tgctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTc < 1:3007116/101‑1 (MQ=33) gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCa < 1:13141680/101‑1 (MQ=33) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCaaa > 1:6355735/1‑101 (MQ=32) cATGGCTGTTGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAgg < 1:5976203/101‑1 (MQ=17) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGga > 1:10699395/1‑101 (MQ=32) tGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGgag < 1:12161911/101‑1 (MQ=33) cTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACt > 1:6146954/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:10979123/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:11867949/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:1173947/1‑101 (MQ=32) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTg > 1:2094431/1‑101 (MQ=32) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTg > 1:12570194/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:2862432/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa < 1:7696736/101‑1 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa > 1:6785074/1‑101 (MQ=32) tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaa > 1:11480060/1‑101 (MQ=32) tgttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACt < 1:192125/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg > 1:4538466/1‑101 (MQ=33) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg < 1:2355435/101‑1 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gg > 1:5644038/1‑101 (MQ=32) gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggag > 1:10881448/1‑101 (MQ=33) gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagga < 1:7293391/101‑1 (MQ=32) aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGaa > 1:8642236/1‑101 (MQ=32) aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGaa > 1:2729407/1‑101 (MQ=33) aaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAg > 1:1471606/1‑101 (MQ=32) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg > 1:176408/1‑101 (MQ=32) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg < 1:13525043/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg < 1:3085996/101‑1 (MQ=32) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:10576740/1‑101 (MQ=2) ttAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATg < 1:4821839/101‑1 (MQ=32) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGa < 1:13765061/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGTGATGAc > 1:6494202/1‑101 (MQ=17) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc < 1:14083425/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc < 1:9012945/101‑1 (MQ=32) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg < 1:6891509/101‑1 (MQ=32) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACg > 1:13663764/1‑101 (MQ=33) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:13264395/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:5476882/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc > 1:9116962/1‑101 (MQ=33) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc < 1:8726058/101‑1 (MQ=32) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:199483/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa > 1:8882457/1‑101 (MQ=33) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa > 1:5324749/1‑101 (MQ=33) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGtga > 1:1605749/1‑99 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa > 1:12670360/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:4423166/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa < 1:11627753/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:13059933/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaa < 1:656266/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:10465321/1‑101 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:3992355/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12938796/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaaat < 1:3157502/101‑3 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:2772573/1‑99 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc < 1:8054046/101‑1 (MQ=255) aaCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGGGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:5091023/1‑101 (MQ=2) aaCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:9316117/1‑101 (MQ=32) aCGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtca < 1:3411816/101‑1 (MQ=255) aCGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcat > 1:13748724/1‑101 (MQ=33) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat < 1:3371983/101‑1 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9560509/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:5348561/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGC‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:11655616/1‑101 (MQ=2) gAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca > 1:5391966/1‑101 (MQ=33) gAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca < 1:8306747/101‑1 (MQ=32) aGCGCAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcatca < 1:4101839/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:1201873/101‑1 (MQ=2) cgcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATgg < 1:5160849/101‑1 (MQ=32) gcAACCCTTGTCTTATGTTGCCAGCAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAATCATCATgc < 1:10455584/101‑2 (MQ=2) gcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGTATGACGTCAAGTCATCATGGc > 1:9838759/1‑101 (MQ=17) gcAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc > 1:6267781/1‑101 (MQ=32) aCCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt < 1:10320786/101‑1 (MQ=32) cccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:13388241/1‑101 (MQ=32) ccTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa > 1:4628225/1‑101 (MQ=32) tATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa < 1:2633253/101‑1 (MQ=32) ttttGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg < 1:3900606/101‑1 (MQ=11) ttttGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg < 1:381990/101‑1 (MQ=11) | TGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGC‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224792‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |