mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,442,037 | 1 | .→C | 3.5% | 37.2 ‑4.3 ‑0.0 | 258 | coding (1456/1896 nt) | thiC | thiamin (pyrimidine moiety) biosynthesis protein |
| * | NC_007779 | 846,367 | 1 | .→C | 2.1% | 21.7 ‑2.5 ‑2.8 | 289 | coding (519/723 nt) | glnQ | glutamine transporter subunit |
| * | NC_007779 | 34,111 | 1 | .→T | 1.7% | 12.0 ‑1.1 ‑0.1 | 241 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 1,978,921 | 1 | .→A | 1.3% | 7.4 0.0 ‑0.3 | 237 | intergenic (‑68/+59) | motA/flhC | proton conductor component of flagella motor/DNA‑binding transcriptional regulator |
| * | NC_007779 | 1,485,339 | 1 | .→G | 1.2% | 7.1 ‑2.3 ‑1.4 | 257 | coding (508/3846 nt) | hrpA | ATP‑dependent helicase |
| * | NC_007779 | 4,200,831 | 1 | .→G | 1.2% | 7.0 ‑2.7 ‑0.0 | 254 | intergenic (+31/‑76) | rplQ/yhdN | 50S ribosomal protein L17/hypothetical protein |
| * | NC_007779 | 4,416,420 | 1 | .→T | 1.2% | 5.8 ‑2.3 ‑0.0 | 253 | coding (439/660 nt) | yjfK | hypothetical protein |
| * | NC_007779 | 3,576,400 | 1 | .→A | 1.2% | 5.3 ‑0.5 ‑0.7 | 251 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 964,573 | 1 | .→G | 0.8% | 2.9 ‑1.6 ‑0.3 | 237 | intergenic (+39/‑169) | ihfB/ycaI | integration host factor (IHF), DNA‑binding protein subunit beta/inner membrane protein |
| * | NC_007779 | 1,881,068 | 1 | .→T | 0.8% | 2.8 0.0 ‑0.4 | 239 | intergenic (‑99/+49) | yeaQ/yoaG | inner membrane protein/hypothetical protein |
| * | NC_007779 | 989,461 | 0 | G→. | 1.1% | 2.7 0.0 ‑0.0 | 275 | intergenic (‑54/+115) | asnS/pncB | asparaginyl tRNA synthetase/nicotinate phosphoribosyltransferase |
| * | NC_007779 | 533,077 | 1 | .→G | 0.8% | 2.6 ‑1.7 ‑0.0 | 239 | intergenic (+27/‑63) | allR/gcl | DNA‑binding transcriptional regulator/glyoxylate carboligase |
| * | NC_007779 | 2,598,509 | 1 | .→T | 0.8% | 2.6 0.0 ‑1.2 | 241 | intergenic (‑93/‑53) | dapA/gcvR | dihydrodipicolinate synthase/DNA‑binding transcriptional repressor |
| * | NC_007779 | 3,059,420 | 1 | .→T | 0.8% | 2.6 0.0 ‑0.0 | 257 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 3,128,640 | 1 | .→T | 0.8% | 2.6 0.0 ‑1.1 | 236 | coding (232/1173 nt) | yghO | DNA‑binding transcriptional regulator |
| * | NC_007779 | 3,627,544 | 1 | .→T | 0.8% | 2.6 ‑0.7 ‑0.1 | 247 | intergenic (‑33/‑78) | pldB/rhtB | lysophospholipase L(2)/neutral amino‑acid efflux system |
| * | NC_007779 | 2,905,438 | 1 | .→A | 0.9% | 2.4 0.0 ‑0.0 | 232 | coding (1160/1299 nt) | eno | enolase |
| * | NC_007779 | 846,327 | 1 | .→A | 0.8% | 2.2 ‑1.6 ‑1.2 | 265 | coding (559/723 nt) | glnQ | glutamine transporter subunit |
| * | NC_007779 | 1,097,402 | 1 | .→A | 0.7% | 2.2 ‑0.7 ‑1.3 | 273 | intergenic (+151/+404) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 224,772 | 1 | .→G | 0.8% | 2.0 0.0 ‑0.0 | 237 | noncoding (1002/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_007779 | 227,969 | 0 | A→G | 100.0% | 0.7 | 2 | noncoding (2211/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,979 | 0 | G→A | 100.0% | 0.7 | 3 | noncoding (2221/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,989 | 0 | T→C | 100.0% | 0.7 | 5 | noncoding (2231/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,004 | 0 | G→A | 100.0% | 0.7 | 29 | noncoding (2246/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,016 | 0 | C→T | 100.0% | 0.7 | 30 | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,017 | 0 | T→G | 100.0% | 0.7 | 30 | noncoding (2259/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,023 | 0 | T→C | 100.0% | 0.7 | 30 | noncoding (2265/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,039 | 0 | A→C | 100.0% | 0.7 | 30 | noncoding (2281/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,042 | 0 | A→C | 100.0% | 0.7 | 30 | noncoding (2284/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,044 | 0 | G→A | 100.0% | 0.7 | 30 | noncoding (2286/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,051 | 0 | G→C | 100.0% | 0.7 | 30 | noncoding (2293/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,052 | 0 | G→C | 100.0% | 0.7 | 30 | noncoding (2294/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,055 | 0 | A→C | 100.0% | 0.7 | 30 | noncoding (2297/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,057 | 0 | T→G | 100.0% | 0.7 | 30 | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,980 | 0 | C→G | 100.0% | 0.6 | 3 | noncoding (2222/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,061 | 0 | G→A | 100.0% | ‑0.5 | 28 | noncoding (2303/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,062 | 0 | G→A | 100.0% | ‑0.5 | 28 | noncoding (2304/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,063 | 0 | T→A | 100.0% | ‑0.5 | 27 | noncoding (2305/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,064 | 0 | C→A | 100.0% | ‑0.5 | 27 | noncoding (2306/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,065 | 0 | G→A | 100.0% | ‑0.5 | 27 | noncoding (2307/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,066 | 0 | G→A | 100.0% | ‑0.5 | 27 | noncoding (2308/2904 nt) | rrlH | 23S ribosomal RNA |