BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 2412225	NA (NA)	13 (0.060)	13/180	NT	5.3%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/aminotransferase
*	?	NC_007779	= 2941527	232 (1.070)	13 (0.060)	13/180	NT	5.3%	intergenic (‑304/+47)	gcvA/ygdI	DNA‑binding transcriptional dual regulator/hypothetical protein

Only 100 of 281 total aligned reads displayed.

TGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTT  >  NC_007779/2941427‑2941627

tgttgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATg                                                                                                       <  1:7901469/101‑1 (MQ=255)

  ttgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTa                                                                                                     <  1:13316610/101‑1 (MQ=255)

  ttgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTa                                                                                                     <  1:10449776/101‑1 (MQ=255)

   tgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAg                                                                                                    >  1:4389814/1‑101 (MQ=255)

   tgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAg                                                                                                    <  1:12000725/101‑1 (MQ=255)

     ttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCa                                                                                                  >  1:11289408/1‑101 (MQ=255)

        tgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCg                                                                                               >  1:14027981/1‑101 (MQ=255)

         gttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGc                                                                                              >  1:4630251/1‑101 (MQ=255)

           ttGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCt                                                                                            <  1:1795344/101‑1 (MQ=255)

             gCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTaa                                                                                          <  1:1273778/101‑1 (MQ=255)

             gCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTaa                                                                                          >  1:13782456/1‑101 (MQ=255)

              cAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAAt                                                                                         >  1:9316395/1‑101 (MQ=255)

              cAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAAt                                                                                         <  1:2903385/101‑1 (MQ=255)

               aaTTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAAtt                                                                                        <  1:13903570/101‑1 (MQ=255)

                aTTGGTCTGCGATTTAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTg                                                                                       <  1:11309671/101‑1 (MQ=255)

                 ttGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGc                                                                                      <  1:2469340/101‑1 (MQ=255)

                   ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGATTAATGTAGCACCGCCTAATTGCgg                                                                                    <  1:6385940‑M2/28‑1 (MQ=255)

                    gTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGt                                                                                   <  1:8973855/101‑1 (MQ=255)

                       tGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑t                                                                               <  1:13942438/101‑1 (MQ=255)

                       tGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑t                                                                               <  1:3432365/101‑1 (MQ=255)

                        gCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tt                                                                              <  1:11745532/101‑1 (MQ=255)

                          gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                            >  1:12196692/1‑101 (MQ=255)

                          gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                            <  1:5045399/101‑1 (MQ=255)

                          gATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                            >  1:10937073/1‑101 (MQ=255)

                          gATTCAGACCATGGTAACAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttt                                                                            <  1:8763108/101‑1 (MQ=255)

                           tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                           >  1:5774429‑M2/66‑101 (MQ=255)

                           aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                           <  1:12525435/101‑1 (MQ=255)

                           aTTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑ttttt                                                                           <  1:6549938/101‑1 (MQ=255)

                            ttCAGACCATGGTAGGCAAGCTTCCTTTTTTCCCTTCCTGTACATTTACCCTGTCTGTCCATAGGGATTAATGTAGCACCGCCTAATTGCGGTGC‑tttttt                                                                          <  1:11591515/101‑1 (MQ=255)

                                 acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTAcc                                                                     >  1:2198513‑M2/60‑101 (MQ=255)

                                 acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTAcc                                                                     >  1:9658492‑M2/60‑101 (MQ=255)

                                 aCCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTAcc                                                                     >  1:13404864/1‑101 (MQ=255)

                                  ccATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCt                                                                    >  1:14310685/1‑101 (MQ=255)

                                   cATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCtt                                                                   >  1:3367735/1‑101 (MQ=255)

                                     tGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGc                                                                 <  1:6567447/101‑1 (MQ=255)

                                       gTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGa                                                               <  1:8369762/101‑1 (MQ=255)

                                        tAGCAAAGCTACCTTTTTTCCCTTCCTGTACATTTCCCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGAt                                                              <  1:2811911/101‑1 (MQ=255)

                                        tAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCCCCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGAt                                                              <  1:11027585/101‑1 (MQ=255)

                                        tAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGAt                                                              <  1:10625232/101‑1 (MQ=255)

                                         aGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATc                                                             >  1:6892978/1‑101 (MQ=255)

                                          gCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcg                                                            <  1:12698694/101‑1 (MQ=255)

                                          gCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcg                                                            <  1:3890170/101‑1 (MQ=255)

                                            aaaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcgcg                                                          <  1:2125034/101‑1 (MQ=255)

                                            aaaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcgcg                                                          >  1:3312587/1‑101 (MQ=255)

                                            aaaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATcgcg                                                          <  1:5701454/101‑1 (MQ=255)

                                             aaGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGa                                                         >  1:13176099/1‑101 (MQ=255)

                                               gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTTACCTTGCGATCGCGaa                                                        >  1:7435834/1‑101 (MQ=255)

                                                  aCCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg                                                     <  1:10738641‑M2/101‑51 (MQ=255)

                                                  aCCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTAc                                                    >  1:6971475/1‑101 (MQ=255)

                                                   ccTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACt                                                   <  1:13696585/101‑1 (MQ=255)

                                                    cTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTg                                                  >  1:59058/1‑101 (MQ=255)

                                                    cTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTg                                                  <  1:13622727/101‑1 (MQ=255)

                                                     ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                 >  1:7841241/1‑101 (MQ=255)

                                                     ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                 >  1:10000793/1‑101 (MQ=255)

                                                     ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                 >  1:1912048/1‑101 (MQ=255)

                                                     ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGa                                                 >  1:1835244/1‑101 (MQ=255)

                                                      tttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑‑TTTTTTTACCTTGCGATCGCGAATTACTGATc                                               <  1:5306596/101‑1 (MQ=255)

                                                         ttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCa                                             <  1:7635051/101‑1 (MQ=255)

                                                         ttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCa                                             <  1:6462137/101‑1 (MQ=255)

                                                          tCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAg                                            <  1:8137397/101‑1 (MQ=255)

                                                            aCTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGtt                                          >  1:1153937/1‑101 (MQ=255)

                                                             cTTCCTGTACATTTACCCTGTCCGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTc                                         <  1:9825543/101‑1 (MQ=255)

                                                              ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCg                                        >  1:8247547/1‑101 (MQ=255)

                                                              ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCg                                        >  1:6009771/1‑101 (MQ=255)

                                                              ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCg                                        >  1:3200515/1‑101 (MQ=255)

                                                              ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCg                                        <  1:4019979/101‑1 (MQ=255)

                                                                ccTGTCCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCTAGCTCGAc                                      >  1:6202050/1‑101 (MQ=255)

                                                                ccTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAc                                      <  1:5978121/101‑1 (MQ=255)

                                                                  tGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCa                                    >  1:415883/1‑101 (MQ=255)

                                                                    tACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtc                                  <  1:14246158/101‑1 (MQ=255)

                                                                     aCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCAtct                                 <  1:5094673/101‑1 (MQ=255)

                                                                      cATTTACCCTGTCTGTCCATAGTGATTAATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                 >  1:10721584‑M2/1‑31 (MQ=255)

                                                                       aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATctct                               >  1:1006991/1‑101 (MQ=255)

                                                                        tttACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCtt                              <  1:4614430/101‑1 (MQ=255)

                                                                        tttACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCtt                              >  1:3874953/1‑101 (MQ=255)

                                                                          tACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTc                            >  1:1470835/1‑101 (MQ=255)

                                                                          tACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTc                            <  1:2086229/101‑1 (MQ=255)

                                                                           aCCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCa                           <  1:943020/101‑1 (MQ=255)

                                                                            cccTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCAc                          >  1:11109056/1‑101 (MQ=255)

                                                                             ccTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACg                         >  1:9104032/1‑101 (MQ=255)

                                                                               tgtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTc                       >  1:10276964/1‑101 (MQ=255)

                                                                               tgtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTc                       <  1:4722612/101‑1 (MQ=255)

                                                                                gtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCa                      >  1:549557/1‑101 (MQ=255)

                                                                                gtctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCa                      <  1:156929/101‑1 (MQ=255)

                                                                                  ctgtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGt                    >  1:5413062/1‑101 (MQ=255)

                                                                                    gtcCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGAACCAGTTCGACCATCTCTTTCACGTCAGTAc                  <  1:3698640/101‑1 (MQ=255)

                                                                                      ccATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACgg                >  1:2510980/1‑101 (MQ=255)

                                                                                      ccATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACgg                >  1:8276011/1‑101 (MQ=255)

                                                                                      ccATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACgg                >  1:11962213/1‑101 (MQ=255)

                                                                                       cATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGt               >  1:7128489/1‑101 (MQ=255)

                                                                                       cATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGt               <  1:166570/101‑1 (MQ=255)

                                                                                        aTAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGtt              >  1:12234964/1‑101 (MQ=255)

                                                                                         tAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTg             >  1:1285245/1‑101 (MQ=255)

                                                                                         tAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTg             >  1:13032557/1‑101 (MQ=255)

                                                                                         tAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTg             >  1:12690486/1‑101 (MQ=255)

                                                                                               ttAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctgc       <  1:840300/101‑1 (MQ=255)

                                                                                                 aaTGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctgctg     <  1:12599705/101‑1 (MQ=255)

                                                                                                   tGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgtt   <  1:13231547/101‑1 (MQ=255)

                                                                                                    gTAGCGCCGCCTTATTGCGGTGC‑TTTTTTTTTCCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgttt  <  1:6756537/101‑1 (MQ=255)

                                                                                                    gTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgttt  <  1:3489402/101‑1 (MQ=255)

TGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGC‑TTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTT  >  NC_007779/2941427‑2941627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.