| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,485,321 | C→G | 10.3% | Q164E (CAG→GAG) | hrpA → | ATP‑dependent helicase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,485,321 | 0 | C→G | 10.3% | 79.0 ‑0.6 ‑0.1 | 261 | Q164E (CAG→GAG) | hrpA | ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): new base (11/16): ref base (112/122): total (123/138) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.45e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.61e-01 | ||||||||||
Only 100 of 269 total aligned reads displayed.
GCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTT > NC_007779/1485221‑1485421 | gCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATcc > 1:1276221/1‑101 (MQ=255) cGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAg < 1:10145084/101‑1 (MQ=255) cGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAg < 1:2288472/101‑1 (MQ=255) cGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAg < 1:1389532/101‑1 (MQ=255) cGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAg > 1:1752983/1‑101 (MQ=255) gggCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGc > 1:1425477/1‑101 (MQ=255) ggCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCa < 1:4209538/101‑1 (MQ=255) gCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCaa < 1:11978270/101‑1 (MQ=255) cGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAg < 1:9544982/101‑1 (MQ=255) cGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAg > 1:2991392/1‑101 (MQ=255) gTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGAc > 1:1460589/1‑101 (MQ=255) gCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGc > 1:2138595/1‑101 (MQ=255) ccATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGc > 1:7035117/2‑101 (MQ=255) cATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGcc < 1:6273571/101‑1 (MQ=255) aTCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCct > 1:7882079/1‑101 (MQ=255) aTCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCct > 1:8878577/1‑101 (MQ=255) ggTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgct > 1:5483253/1‑101 (MQ=255) gTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgctg < 1:13644910/101‑1 (MQ=255) aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg < 1:6345501/101‑1 (MQ=255) cAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGc < 1:11895722/101‑1 (MQ=255) cAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGc > 1:2172154/1‑101 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAg < 1:6888212/101‑1 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:3789337/101‑1 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt > 1:1005031/1‑101 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:11226277/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12793672/1‑101 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12694585/1‑101 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa < 1:11442671/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa < 1:5833192/101‑1 (MQ=255) cAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTa > 1:2641439/1‑101 (MQ=255) aGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTAt > 1:3895982/1‑101 (MQ=255) gCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATc > 1:1603257/1‑101 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCa < 1:3498609/101‑1 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCa > 1:2544237/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat > 1:13441968/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat > 1:3676848/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat < 1:7642373/101‑1 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt < 1:6731401/101‑1 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt < 1:9141936/101‑1 (MQ=255) tCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatta > 1:9820112/1‑101 (MQ=255) cACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattat > 1:11290186/1‑101 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:7096348/101‑1 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:3466101/101‑1 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:1932688/1‑101 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:11259292/1‑101 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:10890369/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACg < 1:7232066/101‑1 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACg > 1:13722217/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACg > 1:8940802/1‑101 (MQ=255) aGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGa > 1:2687141/1‑101 (MQ=255) aGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGa < 1:5602217/101‑1 (MQ=255) tGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAg < 1:8450024/101‑1 (MQ=255) gATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAgc < 1:485568/101‑1 (MQ=255) gATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAgc < 1:10789044/101‑1 (MQ=255) tAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAgcgc < 1:5002057/101‑1 (MQ=255) aaCACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCa > 1:13937337/1‑101 (MQ=255) aaCACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCa < 1:3964150/101‑1 (MQ=255) acacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCAc < 1:553398/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg > 1:4337186/1‑101 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:7821079/101‑1 (MQ=255) acGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGa < 1:12341544/101‑1 (MQ=255) tgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACg < 1:2421099/92‑1 (MQ=255) aTGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACg > 1:1406438/1‑101 (MQ=255) ggTCAAGCTGATGACTAACGGTATCTTGCTGGCGGGGACCCGGCAAACCCGCCTGCTG‑TCGCGGTACGACCCTATAATTATTGACAAAGCGCACAAACGCa > 1:12246971/1‑101 (MQ=255) ggTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCa > 1:2748838/1‑101 (MQ=255) tCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGc < 1:340206/101‑1 (MQ=255) cAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGcc > 1:7040777/1‑101 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt < 1:13124132/101‑1 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt < 1:1288183/101‑1 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt > 1:2027804/1‑101 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt > 1:4148092/1‑101 (MQ=255) aGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTg > 1:5304332/1‑101 (MQ=255) acTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtca < 1:7421732/100‑3 (MQ=255) acTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtca < 1:7957165/100‑3 (MQ=255) cTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaa < 1:1792936/101‑1 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:5735005/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:289535/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAata > 1:10618268/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaaca < 1:458712/101‑3 (MQ=255) gatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaaca < 1:12507595/101‑3 (MQ=255) tgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATc < 1:9525527/101‑1 (MQ=255) tgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATc > 1:3301281/1‑101 (MQ=255) ccGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAt > 1:4711406/1‑101 (MQ=255) cGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtt > 1:2383482/1‑101 (MQ=255) gACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGACCGCAGCCTGAATATCGAttt > 1:5054359/1‑101 (MQ=255) aCGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttt < 1:7858453/101‑1 (MQ=255) ggTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttttt > 1:9699834/1‑101 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:12635024/1‑101 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:10374383/1‑101 (MQ=255) tCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTc < 1:5283379/101‑1 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCg > 1:13381677/1‑101 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCATGAATATCGATTTTTTGCTCg < 1:11601802/101‑1 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:1062501/101‑1 (MQ=255) tgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGc < 1:1111373/101‑1 (MQ=255) ctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTa < 1:6953120/101‑1 (MQ=255) ggCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTAtt > 1:1072308/1‑101 (MQ=255) ggAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGa < 1:6513313/101‑1 (MQ=255) tCCAGCAAGACCGCCTGGTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAagag > 1:9037542/1‑101 (MQ=255) tCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAagag < 1:8460591/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt < 1:4484096/101‑1 (MQ=255) | GCCGGGCGGTTGCATCGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTT > NC_007779/1485221‑1485421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |