| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,485,336 | C→T | 10.9% | L169L (CTG→TTG) | hrpA → | ATP‑dependent helicase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,485,336 | 0 | C→T | 10.9% | 63.7 ‑0.2 ‑0.0 | 248 | L169L (CTG→TTG) | hrpA | ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): new base (11/16): ref base (99/121): total (111/137) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.38e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.91e-01 | ||||||||||
Only 100 of 268 total aligned reads displayed.
CGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTC > NC_007779/1485236‑1485435 | cGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGATCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgc > 1:1197248/1‑101 (MQ=255) ggTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgct > 1:11788407/1‑101 (MQ=255) ggTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgct > 1:7253840/1‑101 (MQ=255) gTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCctgctg < 1:13644910/101‑1 (MQ=255) aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg < 1:1764270/101‑1 (MQ=255) aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg < 1:6345501/101‑1 (MQ=255) cAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGc > 1:2172154/1‑101 (MQ=255) aaaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCa > 1:12245344/1‑101 (MQ=255) aaaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCa > 1:5051853/1‑101 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAg < 1:6888212/101‑1 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAg > 1:8883658/1‑101 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt > 1:1005031/1‑101 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:11226277/101‑1 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:5642434/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa < 1:5833192/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12694585/1‑101 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12793672/1‑101 (MQ=255) gTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGac > 1:5522881/1‑101 (MQ=255) ttCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGacac < 1:14129773/101‑1 (MQ=255) cAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTa > 1:2641439/1‑101 (MQ=255) gCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATc > 1:1603257/1‑101 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCa > 1:1657823/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat > 1:3676848/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat > 1:13441968/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat < 1:7642373/101‑1 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt < 1:9141936/101‑1 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt > 1:8367022/1‑101 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:3466101/101‑1 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:12922075/101‑1 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:10890369/1‑101 (MQ=255) tAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGAc > 1:3944681/1‑101 (MQ=255) tAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGAc > 1:790613/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACg > 1:13722217/1‑101 (MQ=255) gTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGaa < 1:11282295/101‑1 (MQ=255) acacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCAc < 1:9642305/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg > 1:4337186/1‑101 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:7227648/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:7821079/101‑1 (MQ=255) acGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGa < 1:12341544/101‑1 (MQ=255) gATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAAc > 1:8128554/1‑101 (MQ=255) ctgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAAc < 1:1399495/91‑1 (MQ=255) tgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACg > 1:1901017/10‑101 (MQ=255) tgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACg < 1:4978027/92‑1 (MQ=255) aTGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACg < 1:8972207/101‑1 (MQ=255) tGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGc < 1:9075611/101‑1 (MQ=255) gcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGc > 1:5420356/9‑101 (MQ=255) cAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGcc > 1:7040777/1‑101 (MQ=255) cTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGaa < 1:2687897/101‑1 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:289535/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:5136135/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:5735005/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAata > 1:3858077/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAata > 1:10618268/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaaca < 1:12507595/101‑3 (MQ=255) gatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaaca < 1:458712/101‑3 (MQ=255) atgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAacat < 1:3309664/101‑1 (MQ=255) tgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATc < 1:9525527/101‑1 (MQ=255) gaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCg < 1:2594173/101‑1 (MQ=255) aCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGa < 1:7854827/101‑1 (MQ=255) cGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtt > 1:2383482/1‑101 (MQ=255) cGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGact < 1:11173074/101‑3 (MQ=255) cGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAttttt < 1:9771593/101‑1 (MQ=255) ggTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttttt < 1:8530847/101‑1 (MQ=255) ggTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGActtcct < 1:8459031/101‑4 (MQ=255) gTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTg < 1:4046325/101‑1 (MQ=255) gTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTg < 1:12625329/101‑1 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:3487590/1‑101 (MQ=255) tCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTc > 1:2000548/1‑101 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCg < 1:1142858/101‑1 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCg < 1:2805308/101‑1 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCg > 1:13381677/1‑101 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:1062501/101‑1 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACCACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:14328955/101‑1 (MQ=255) ctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTa < 1:2103716/101‑1 (MQ=255) ctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTa < 1:6953120/101‑1 (MQ=255) tgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTAt > 1:5550871/1‑101 (MQ=255) ggCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTAtt > 1:1072308/1‑101 (MQ=255) ggAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGa < 1:6513313/101‑1 (MQ=255) agaTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGaaa < 1:4732761/101‑1 (MQ=255) gaTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag > 1:12785349/1‑101 (MQ=255) gaTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag < 1:5297316/101‑1 (MQ=255) ccAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGt < 1:2405848/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt < 1:4484096/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt > 1:11457651/1‑101 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt > 1:13859085/1‑101 (MQ=255) aGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTAACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtg > 1:6021222/1‑101 (MQ=255) cAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgct > 1:7085609/1‑101 (MQ=255) cAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgct < 1:10786216/101‑1 (MQ=255) aCCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcg < 1:6573505/101‑1 (MQ=255) ccGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgc < 1:8742801/101‑1 (MQ=255) cGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgcg < 1:9930643/101‑1 (MQ=255) gCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcgg > 1:4185144/1‑101 (MQ=255) ccggctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTTAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggc < 1:389220/98‑1 (MQ=255) ccTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggc < 1:11002397/101‑1 (MQ=255) ctgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggcg > 1:2499697/1‑101 (MQ=255) ctgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggcg > 1:10359411/1‑101 (MQ=255) ctgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggcg < 1:13226619/101‑1 (MQ=255) tgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGt > 1:10156236/1‑101 (MQ=255) gctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTc > 1:3210556/1‑101 (MQ=255) gctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTc > 1:4858426/1‑101 (MQ=255) | CGGTTACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTC > NC_007779/1485236‑1485435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |