| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,485,341 | G→T | 8.5% | M170I (ATG→ATT) | hrpA → | ATP‑dependent helicase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,485,341 | 0 | G→T | 8.5% | 49.2 ‑0.2 ‑0.0 | 258 | M170I (ATG→ATT) | hrpA | ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): new base (11/11): ref base (109/127): total (120/138) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.24e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 | ||||||||||
Only 100 of 269 total aligned reads displayed.
ACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACC > NC_007779/1485241‑1485441 | aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg < 1:6345501/101‑1 (MQ=255)aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg > 1:4452683/1‑101 (MQ=255)aCAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATg < 1:1764270/101‑1 (MQ=255) aaaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCa > 1:5051853/1‑101 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAg > 1:8883658/1‑101 (MQ=255) aaGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAg < 1:6888212/101‑1 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt > 1:1005031/1‑101 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:5642434/101‑1 (MQ=255) aGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGt < 1:11226277/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12793672/1‑101 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa < 1:5833192/101‑1 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa > 1:12694585/1‑101 (MQ=255) gTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTa < 1:11442671/101‑1 (MQ=255) ttCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGacac < 1:13325960/101‑1 (MQ=255) ttCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGacac < 1:14129773/101‑1 (MQ=255) aGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTAt > 1:3895982/1‑101 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCa < 1:3498609/101‑1 (MQ=255) cGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCa > 1:2544237/1‑101 (MQ=255) gATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCat > 1:3676848/1‑101 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt > 1:2148900/1‑101 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt > 1:11397312/1‑101 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt > 1:8367022/1‑101 (MQ=255) aTCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatt < 1:9141936/101‑1 (MQ=255) tCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCatta < 1:1590395/101‑1 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:3466101/101‑1 (MQ=255) aCGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCattatt < 1:12922075/101‑1 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:11259292/1‑101 (MQ=255) gTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGa > 1:10890369/1‑101 (MQ=255) tAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGAc > 1:3944681/1‑101 (MQ=255) aaGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACg > 1:13722217/1‑101 (MQ=255) aGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGa > 1:2687141/1‑101 (MQ=255) aGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGa > 1:6950174/1‑101 (MQ=255) tGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAg < 1:11913265/101‑1 (MQ=255) tGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAg > 1:5499104/1‑101 (MQ=255) gATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAgc < 1:485568/101‑1 (MQ=255) aaCACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCa < 1:776036/101‑1 (MQ=255) acacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCAc < 1:9642305/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg < 1:7821079/101‑1 (MQ=255) cacGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACg > 1:9783017/1‑101 (MQ=255) ctgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAAc < 1:1399495/91‑1 (MQ=255) tgcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACg < 1:4978027/92‑1 (MQ=255) aTGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACg < 1:8972207/101‑1 (MQ=255) aTGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACg < 1:3219559/101‑1 (MQ=255) tGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGc < 1:9075611/101‑1 (MQ=255) gcattaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGc > 1:5059268/9‑101 (MQ=255) ggTCAAGCTGATGACTAACGGTATCTTGCTGGCGGGGACCCGGCAAACCCGCCTGCTG‑TCGCGGTACGACCCTATAATTATTGACAAAGCGCACAAACGCa > 1:12246971/1‑101 (MQ=255) ggTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCa > 1:2748838/1‑101 (MQ=255) ttaaacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGc > 1:2330640/6‑101 (MQ=255) cAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGcc > 1:7040777/1‑101 (MQ=255) aaGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCt < 1:13124132/101‑1 (MQ=255) aacTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtc < 1:13636936/99‑2 (MQ=255) aGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTg < 1:7952648/101‑1 (MQ=255) acTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTGCGTG‑AGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtca < 1:7421732/100‑3 (MQ=255) acTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtca < 1:1982456/100‑3 (MQ=255) acTGATGACCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCtca > 1:13394663/2‑99 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat > 1:289535/1‑101 (MQ=255) tgatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAat < 1:2620139/101‑1 (MQ=255) gatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAata > 1:3858077/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAata > 1:10618268/1‑101 (MQ=255) gatgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCaaca < 1:12507595/101‑3 (MQ=255) atgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAatat < 1:7174853/101‑1 (MQ=255) atgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAacat > 1:12273039/1‑101 (MQ=255) atgaCCGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAacat < 1:3309664/101‑1 (MQ=255) tgaCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATc < 1:9525527/101‑1 (MQ=255) aCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGa > 1:1834742/1‑101 (MQ=255) ccGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAt > 1:6507930/1‑101 (MQ=255) cGACGGTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGact < 1:11173074/101‑3 (MQ=255) aCGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttt < 1:7858453/101‑1 (MQ=255) ggTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGAtttttt < 1:8530847/101‑1 (MQ=255) ggTATCCTGCTGGCCGAAATTGGCCGCGACCGACTGTTG‑CGTGAGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGActtcct < 1:8459031/101‑4 (MQ=255) gTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTg < 1:12625329/101‑1 (MQ=255) aTCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCt > 1:248268/1‑101 (MQ=255) tCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTc < 1:5283379/101‑1 (MQ=255) ccTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCATGAATATCGATTTTTTGCTCg < 1:11601802/101‑1 (MQ=255) ctgctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCgg < 1:1062501/101‑1 (MQ=255) ctgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTa < 1:2103716/101‑1 (MQ=255) tgGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTAt > 1:5550871/1‑101 (MQ=255) ggCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTAtt > 1:1072308/1‑101 (MQ=255) agaTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGaaa < 1:4732761/101‑1 (MQ=255) gaTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag > 1:12785349/1‑101 (MQ=255) aTCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAaga < 1:538465/101‑1 (MQ=255) ccAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGt < 1:2405848/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt < 1:4484096/101‑1 (MQ=255) cAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGtt > 1:13859085/1‑101 (MQ=255) aGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTAACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtg > 1:6021222/1‑101 (MQ=255) gCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgc < 1:5724581/101‑1 (MQ=255) cAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgct > 1:7085609/1‑101 (MQ=255) cAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTtgct < 1:10786216/101‑1 (MQ=255) aCCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcg < 1:6573505/101‑1 (MQ=255) ccGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgc < 1:8742801/101‑1 (MQ=255) cGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgcg < 1:9930643/101‑1 (MQ=255) cGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCcgcg > 1:1651987/1‑101 (MQ=255) gCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcgg > 1:4185144/1‑101 (MQ=255) ccTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggc < 1:11002397/101‑1 (MQ=255) ctgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCgcggcg > 1:10359411/1‑101 (MQ=255) tgctg‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGt > 1:10156236/1‑101 (MQ=255) g‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTg < 1:12391479/101‑1 (MQ=255) g‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTg < 1:4591834/101‑1 (MQ=255) aTGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGa < 1:4027613/101‑1 (MQ=255) gCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGAcc > 1:8267182/1‑101 (MQ=255) | ACAAAGTGCGTTTCAGCGATCACGTAAGTGATAACACGATGGTCAAGCTGATGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTG‑ATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACC > NC_007779/1485241‑1485441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |