Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 1,486,016 A→G 2.8% E395E (GAA→GAG)  hrpA → ATP‑dependent helicase

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077791,486,0160A→G 2.8% 8.3 0.0 ‑0.2217E395E (GAA→GAG) hrpAATP‑dependent helicase
Reads supporting (aligned to +/- strand):  new base (3/3):  ref base (101/110):  total (104/113)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.78e-01

Only 100 of 225 total aligned reads displayed.

GCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGCGAT  >  NC_007779/1485917‑1486115
                                                                                                   |                                                                                                   
gCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAg                                                                                                    >  1:447571/1‑101 (MQ=255)
 cGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGa                                                                                                   <  1:6548019/101‑1 (MQ=255)
      gCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGAtt                                                                                              <  1:7765560/101‑1 (MQ=255)
       ccGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGAttt                                                                                             <  1:9723146/101‑1 (MQ=255)
        cGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTc                                                                                            >  1:13974577/1‑101 (MQ=255)
          aTTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCct                                                                                          <  1:10609657/101‑1 (MQ=255)
           ttGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCctc                                                                                         <  1:12977452/101‑1 (MQ=255)
           ttGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCctc                                                                                         >  1:11471776/1‑101 (MQ=255)
           ttGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCctc                                                                                         <  1:3352537/101‑1 (MQ=255)
            tGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCctct                                                                                        <  1:12093066/101‑1 (MQ=255)
             gAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCtctc                                                                                       <  1:5101688/101‑1 (MQ=255)
              aGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCCCTcg                                                                                      <  1:13515105/101‑1 (MQ=255)
               gCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTcgc                                                                                     >  1:7127816/1‑101 (MQ=255)
                ccGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTcgcg                                                                                    <  1:3130940/101‑1 (MQ=255)
                 cGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCgcgc                                                                                   >  1:2167825/1‑101 (MQ=255)
                  gATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGcc                                                                                  >  1:1603970/1‑101 (MQ=255)
                   aTTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGccc                                                                                 >  1:2855310/1‑101 (MQ=255)
                    tttCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCg                                                                                <  1:29558/101‑1 (MQ=255)
                    tttCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCg                                                                                <  1:13058916/101‑1 (MQ=255)
                     ttCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCgg                                                                               >  1:13721187/1‑101 (MQ=255)
                     ttCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCgg                                                                               >  1:8320362/1‑101 (MQ=255)
                      tCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGa                                                                              <  1:8736079/101‑1 (MQ=255)
                      tCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGa                                                                              <  1:1735227/101‑1 (MQ=255)
                        ccAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGt                                                                            <  1:10188846/101‑1 (MQ=255)
                         cAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGtt                                                                           >  1:4534069/1‑101 (MQ=255)
                         cAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGtt                                                                           <  1:11502128/101‑1 (MQ=255)
                          aGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGttt                                                                          >  1:6976082/1‑101 (MQ=255)
                          aGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGttt                                                                          >  1:9214246/1‑101 (MQ=255)
                           ggCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTa                                                                         >  1:11270425/1‑101 (MQ=255)
                           ggCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTa                                                                         <  1:12442984/101‑1 (MQ=255)
                                cTGCCAATCAGTGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGAt                                                                    <  1:8214839/101‑1 (MQ=255)
                                cTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGAt                                                                    <  1:11795020/101‑1 (MQ=255)
                                 tGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATc                                                                   >  1:4260536/1‑101 (MQ=255)
                                  gCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATcc                                                                  <  1:2575304/101‑1 (MQ=255)
                                   ccAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCg                                                                 >  1:12387556/1‑101 (MQ=255)
                                    cAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCgg                                                                >  1:13418972/1‑101 (MQ=255)
                                    cAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCgg                                                                <  1:10813725/101‑1 (MQ=255)
                                           cGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCt                                                         >  1:2717243/1‑101 (MQ=255)
                                           cGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCt                                                         <  1:6709829/101‑1 (MQ=255)
                                           cGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCt                                                         <  1:3874089/101‑1 (MQ=255)
                                            gTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTg                                                        <  1:12539700/101‑1 (MQ=255)
                                             tAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGc                                                       <  1:10084978/101‑1 (MQ=255)
                                                  gCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTAcc                                                  <  1:5266237/101‑1 (MQ=255)
                                                    cGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCaa                                                >  1:5504679/1‑101 (MQ=255)
                                                    cGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCaa                                                >  1:1264045/1‑101 (MQ=255)
                                                       tgtgGTCGTGTGTCCGCAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCATCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCt                                             <  1:6138913/101‑1 (MQ=255)
                                                       tgtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCt                                             >  1:3228737/1‑101 (MQ=255)
                                                       tgtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCt                                             >  1:5844425/1‑101 (MQ=255)
                                                       tgtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCt                                             >  1:1713367/1‑101 (MQ=255)
                                                        gtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTg                                            <  1:5895558/101‑1 (MQ=255)
                                                        gtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTg                                            <  1:471725/101‑1 (MQ=255)
                                                        gtgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTg                                            <  1:7702551/101‑1 (MQ=255)
                                                         tgGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTgg                                           >  1:3952803/1‑101 (MQ=255)
                                                           gTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGcc                                         <  1:11420091/101‑1 (MQ=255)
                                                            tCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCt                                        <  1:9393533/101‑1 (MQ=255)
                                                             cGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTc                                       >  1:12206868/1‑101 (MQ=255)
                                                               tgtgtCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCgg                                     <  1:10105961/101‑1 (MQ=255)
                                                               tgtgtCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCgg                                     >  1:10527499/1‑101 (MQ=255)
                                                                gtgtCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGt                                    <  1:12689702/101‑1 (MQ=255)
                                                                   tCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTAt                                 >  1:11591809/1‑101 (MQ=255)
                                                                    ccGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTAtt                                <  1:7842541/101‑1 (MQ=255)
                                                                     cGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTAttt                               >  1:13801097/1‑101 (MQ=255)
                                                                     cGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTAttt                               >  1:12879718/1‑101 (MQ=255)
                                                                      gAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTAtttt                              <  1:7082115/101‑1 (MQ=255)
                                                                       aaGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTTCGTACCAACCTGGCCTCGGTTATTTTg                             <  1:3650793/101‑1 (MQ=255)
                                                                       aaGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTg                             >  1:11766206/1‑101 (MQ=255)
                                                                       aaGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTg                             <  1:7858390/101‑1 (MQ=255)
                                                                        aGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGc                            >  1:4883717/1‑101 (MQ=255)
                                                                         gggATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCa                           <  1:12044859/101‑1 (MQ=255)
                                                                          ggATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAg                          <  1:8611089/101‑1 (MQ=255)
                                                                            aTCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGAt                        <  1:7045023/101‑1 (MQ=255)
                                                                            aTCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGAt                        <  1:10988611/101‑1 (MQ=255)
                                                                            aTCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGAt                        >  1:9352222/1‑101 (MQ=255)
                                                                             tCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATg                       <  1:12271095/101‑1 (MQ=255)
                                                                             tCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATg                       <  1:1499317/101‑1 (MQ=255)
                                                                              ggcgaTTCGTCTCTACAGCGAGGAGGAATTTCTCTCTCGCCCCGAGTTTACGGATCCGGAGATTCTGCGCACCAATCTCGCTTCGGTTGTACTGCAAATGa                      <  1:10014330/97‑1 (MQ=255)
                                                                               tGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATgcc                     >  1:3612980/1‑99 (MQ=255)
                                                                               gcgaTTCGTCTCTACAGCGAGGAGGAATTTCTCTCTCGCCCCGAGTTTACGGATCCGGAGATTCTGCGCACCAATCTCGCTTCGGTTGTACTGCAAATGat                     <  1:11587725/98‑2 (MQ=255)
                                                                                gTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGAcc                    >  1:13246856/1‑101 (MQ=255)
                                                                                 tATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACcg                   >  1:4609922/1‑101 (MQ=255)
                                                                                  aTTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACcgc                  <  1:8470025/101‑1 (MQ=255)
                                                                                  aTTCGTCTCTACAGCGAGGAGGAATTTCTCTCTCGCCCCGAGTTTACGGATCCGGAGATTCTGCGCACCAATCTCGCTTCGGTTGTACTGCAAATGatttc                  >  1:11885205/1‑97 (MQ=255)
                                                                                   ttCGTCTCTACAGCGAGGAGGAATTTCTCTCTCGCCCCGAGTTTACGGATCCGGAGATTCTGCGCACCAATCTCGCTTCGGTTGTACTGCAAATGatttcg                 >  1:3476298/1‑96 (MQ=255)
                                                                                      gTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctg              >  1:2085879/1‑101 (MQ=255)
                                                                                       tctcTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctgg             <  1:6112989/101‑1 (MQ=255)
                                                                                        ctctATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggg            >  1:14066858/1‑101 (MQ=255)
                                                                                         tctATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctgggg           <  1:1989723/101‑1 (MQ=255)
                                                                                          ctATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggc          >  1:12950007/1‑101 (MQ=255)
                                                                                           tATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggct         >  1:9653584/1‑101 (MQ=255)
                                                                                            aTTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggctg        >  1:2410198/1‑101 (MQ=255)
                                                                                            aTTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggctg        <  1:6031248/101‑1 (MQ=255)
                                                                                             ttCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggctgg       >  1:5676303/1‑101 (MQ=255)
                                                                                             ttCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggctgg       <  1:6338144/101‑1 (MQ=255)
                                                                                              tCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCgctggggctggg      <  1:8145777/101‑1 (MQ=255)
                                                                                               ccGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGc     <  1:13889510/101‑1 (MQ=255)
                                                                                               ccGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGc     <  1:3520704/101‑1 (MQ=255)
                                                                                               ccGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGc     <  1:6561177/101‑1 (MQ=255)
                                                                                                cGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGCg    >  1:9786675/1‑101 (MQ=255)
                                                                                                 gAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGCGa   >  1:10413038/1‑101 (MQ=255)
                                                                                                  aaGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGCGat  >  1:1116420/1‑101 (MQ=255)
                                                                                                   |                                                                                                   
GCGTTTGCCGATTGAGCCGATTTCCCAGGCGTCTGCCAATCAGCGTAAAGGCCGCTGTGGTCGTGTGTCCGAAGGGATCTGTATTCGTCTCTATTCCGAAGACGATTTCCTCTCGCGCCCGGAGTTTACCGATCCGGAGATTCTGCGTACCAACCTGGCCTCGGTTATTTTGCAGATGACCGCGCTGGGGCTGGGCGAT  >  NC_007779/1485917‑1486115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.