Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 3,450,270 T→A 12.5% V354V (GTA→GTT)  rpoC ← RNA polymerase, beta prime subunit

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,450,2700T→A12.5% 97.6 ‑1.3 ‑0.1263V354V (GTA→GTT) rpoCRNA polymerase, beta prime subunit
Reads supporting (aligned to +/- strand):  new base (19/14):  ref base (108/122):  total (127/136)
Fisher's exact test strand distribution p-value = 2.70e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.56e-01

Only 100 of 275 total aligned reads displayed.

GCAGTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGACGCT  >  NC_007779/3450170‑3450370
                                                                                                    |                                                                                                    
gCAGTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGAtt                                                                                                      <  1:4790279/101‑1 (MQ=255)
  aGTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTAc                                                                                                    <  1:810360/101‑1 (MQ=255)
  aGTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTAc                                                                                                    >  1:3635123/1‑101 (MQ=255)
   gTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCNNNNNNNNNNCTACGGTGATTACa                                                                                                   >  1:7213120/1‑101 (MQ=255)
         gCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGa                                                                                             >  1:9031692/1‑101 (MQ=255)
         gCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGa                                                                                             <  1:14216059/101‑1 (MQ=255)
          cTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGAc                                                                                            <  1:12158621/101‑1 (MQ=255)
          cTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGAc                                                                                            <  1:494571/101‑1 (MQ=255)
            tGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCg                                                                                          >  1:7571853/1‑101 (MQ=255)
             gCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCgg                                                                                         <  1:12636723/101‑1 (MQ=255)
             gCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCgg                                                                                         >  1:4627338/1‑101 (MQ=255)
             gCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCgg                                                                                         >  1:4898881/1‑101 (MQ=255)
             gCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCgg                                                                                         >  1:5586959/1‑101 (MQ=255)
             gCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCgg                                                                                         <  1:6658288/101‑1 (MQ=255)
              ccGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGa                                                                                        >  1:11613799/1‑101 (MQ=255)
              ccGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGa                                                                                        >  1:5126738/1‑101 (MQ=255)
                gTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGagt                                                                                      >  1:7937534/1‑101 (MQ=255)
                 tAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGagta                                                                                     >  1:328308/1‑101 (MQ=255)
                  aGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGagtag                                                                                    >  1:7676715/1‑101 (MQ=255)
                     tGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCa                                                                                 <  1:13318937/101‑1 (MQ=255)
                       aaCGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAac                                                                               >  1:2914479/1‑101 (MQ=255)
                        aCGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAaca                                                                              <  1:10020519/101‑1 (MQ=255)
                         cGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAacac                                                                             <  1:1622917/101‑1 (MQ=255)
                           gcttGAACAGCTCAAGAGCCATCAGCTTCGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGc                                                                           <  1:12823889/99‑1 (MQ=255)
                           gTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGc                                                                           <  1:3828783/101‑1 (MQ=255)
                           gTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGc                                                                           <  1:11401857/101‑1 (MQ=255)
                            tttGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCt                                                                          >  1:5130954/1‑101 (MQ=255)
                            cttGAACAGCTCAAGAGCCATCAGCTTCGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCt                                                                          >  1:4035331/2‑101 (MQ=255)
                              tGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTa                                                                        <  1:13743661/101‑1 (MQ=255)
                               gAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTAc                                                                       >  1:2117745/1‑101 (MQ=255)
                                 aCAGCTCAAGAGCCATCAGCTTCGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTAccc                                                                     >  1:2398837/1‑100 (MQ=255)
                                   aGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAg                                                                   <  1:2770683/101‑1 (MQ=255)
                                   aGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAg                                                                   >  1:7639779/1‑101 (MQ=255)
                                   aGCTCCAATGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAg                                                                   >  1:1092257/1‑101 (MQ=255)
                                    gCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGc                                                                  <  1:12231343/101‑1 (MQ=255)
                                    gCTCAAGAGCCATCAGCTTCGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGc                                                                  <  1:6974773/101‑1 (MQ=255)
                                     cTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCa                                                                 >  1:1436153/1‑101 (MQ=255)
                                      tCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAg                                                                >  1:200107/1‑101 (MQ=255)
                                       ccAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAgg                                                               >  1:10634661/1‑101 (MQ=255)
                                       ccAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAgg                                                               >  1:5223049/1‑101 (MQ=255)
                                        cAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGt                                                              >  1:10252357/1‑101 (MQ=255)
                                         aGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGtt                                                             <  1:2554028/101‑1 (MQ=255)
                                          gTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTc                                                            <  1:7656237/101‑1 (MQ=255)
                                          gTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTc                                                            <  1:13607861/101‑1 (MQ=255)
                                           tGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCt                                                           >  1:13760474/1‑101 (MQ=255)
                                            gCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTg                                                          <  1:2709443/101‑1 (MQ=255)
                                               atcagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCCGGTTCTGACg                                                       >  1:8337801/6‑101 (MQ=255)
                                               atcagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACg                                                       >  1:9704900/6‑101 (MQ=255)
                                               atcagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACg                                                       >  1:11235558/6‑101 (MQ=255)
                                               atcagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACg                                                       <  1:7694836/96‑1 (MQ=255)
                                               aTTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACg                                                       >  1:7511090/1‑101 (MQ=255)
                                               aTTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACg                                                       <  1:6803118/101‑1 (MQ=255)
                                                tcagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACgg                                                      >  1:8818418/5‑101 (MQ=255)
                                                 tttCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGa                                                     >  1:13146227/1‑101 (MQ=255)
                                                 cagcttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACGGa                                                     >  1:6247736/4‑101 (MQ=255)
                                                   tcttcGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGaaa                                                   <  1:5375439/101‑1 (MQ=255)
                                                    cttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACATGCTTACCCAGCAGGTTCTGACGGAAAc                                                  <  1:8570884/101‑1 (MQ=255)
                                                    cttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACGGAAAc                                                  >  1:11583836/1‑101 (MQ=255)
                                                    cttcGGCAGACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACGGAAAc                                                  >  1:3093990/1‑101 (MQ=255)
                                                    cttcGGCAGACCACACGGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACGGAAAc                                                  <  1:8179038/101‑1 (MQ=255)
                                                     ttcGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGAAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACg                                                 >  1:1178807/1‑101 (MQ=255)
                                                         gCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGAccc                                             <  1:7129911/101‑1 (MQ=255)
                                                          cAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCt                                            <  1:9853017/101‑1 (MQ=255)
                                                           aGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTg                                           <  1:10121405/101‑1 (MQ=255)
                                                            gACCACACTGGTGCAGCTTCAGCTGCGGGCCGACGATAATAACCGAACGGCCGGAGTAGTCAACACGCTTACCCAGCAGGTTCTGACGGAAACGACCCTgc                                          >  1:2050814/1‑100 (MQ=255)
                                                             aCCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGtt                                         <  1:614273/101‑1 (MQ=255)
                                                                 cACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACCCGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTAcc                                     <  1:6462667/101‑1 (MQ=255)
                                                                   cTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCtt                                   <  1:7306872/101‑1 (MQ=255)
                                                                    tGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCttt                                  <  1:4554495/101‑1 (MQ=255)
                                                                      aTGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGa                                >  1:4688562/1‑101 (MQ=255)
                                                                        gCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATc                              >  1:3667988/1‑101 (MQ=255)
                                                                            aCGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGt                          >  1:5539055/1‑101 (MQ=255)
                                                                            aCGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGt                          <  1:584521/101‑1 (MQ=255)
                                                                             cGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTc                         <  1:5756139/101‑1 (MQ=255)
                                                                             cGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTc                         >  1:422422/1‑101 (MQ=255)
                                                                              gCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCg                        <  1:6904889/101‑1 (MQ=255)
                                                                               cAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCgg                       >  1:1197759/1‑101 (MQ=255)
                                                                                  gTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCa                    <  1:9197471/101‑1 (MQ=255)
                                                                                    aTGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCaaa                  <  1:8006524/101‑1 (MQ=255)
                                                                                     tGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAg                 >  1:12416852/1‑101 (MQ=255)
                                                                                     tGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAg                 <  1:10971782/101‑1 (MQ=255)
                                                                                        aCCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGAtt              >  1:7461305/1‑101 (MQ=255)
                                                                                         ccTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGAttt             <  1:8476100/101‑1 (MQ=255)
                                                                                         ccTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGAttt             >  1:11669166/1‑101 (MQ=255)
                                                                                         ccTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGAttt             >  1:11122901/1‑101 (MQ=255)
                                                                                          cTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTc            >  1:4342121/1‑101 (MQ=255)
                                                                                          cTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTAGATCATGTCGGCCAAAGATTTc            <  1:2371053/101‑1 (MQ=255)
                                                                                           tACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCa           >  1:5919710/1‑101 (MQ=255)
                                                                                            aCGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCag          >  1:12775687/1‑101 (MQ=255)
                                                                                            aCGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCag          >  1:10550052/1‑101 (MQ=255)
                                                                                            aCGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCag          >  1:574174/1‑101 (MQ=255)
                                                                                            aCGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCag          <  1:13997726/101‑1 (MQ=255)
                                                                                            aCGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATCTCag          <  1:13516354/101‑1 (MQ=255)
                                                                                              ggTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCagag        >  1:6522246/1‑101 (MQ=255)
                                                                                              ggTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCagag        >  1:12935578/1‑101 (MQ=255)
                                                                                                tGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGa      >  1:13419652/1‑101 (MQ=255)
                                                                                                 gATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGAc     <  1:1851266/101‑1 (MQ=255)
                                                                                                 gATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGAc     <  1:3540902/101‑1 (MQ=255)
                                                                                                  aTTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGACg    >  1:10399801/1‑101 (MQ=255)
                                                                                                    tACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGACGCt  <  1:2195375/101‑1 (MQ=255)
                                                                                                    |                                                                                                    
GCAGTTCCAGCTTGCCGTAGATGAACGGTTTGAACAGCTCCAGTGCCATTTTCTTCGGCAGACCGCACTGATGCAGACGCAGGTATGGACCTACGGTGATTACAGAACGACCGGAGTAGTCAACACGCTTACCGAGCAGGTTCTGACGGAAACGACCCTGTTTACCTTTGATCATGTCGGCCAAAGATTTCAGAGGACGCT  >  NC_007779/3450170‑3450370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.