Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 3,453,399 A→G 3.6% L680L (TTG→CTG)  rpoB ← RNA polymerase subunit beta

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,453,3990A→G 3.6% 16.8 ‑1.8 ‑1.6252L680L (TTG→CTG) rpoBRNA polymerase subunit beta
Reads supporting (aligned to +/- strand):  new base (7/2):  ref base (120/123):  total (127/125)
Fisher's exact test strand distribution p-value = 1.72e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.50e-02

Only 100 of 266 total aligned reads displayed.

CCGGAGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTCGCGG  >  NC_007779/3453299‑3453499
                                                                                                    |                                                                                                    
  ggAGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATg                                                                                                    >  1:4369081/1‑101 (MQ=255)
   gAGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGc                                                                                                   >  1:5959726/1‑101 (MQ=255)
    aGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCa                                                                                                  >  1:12287482/1‑101 (MQ=255)
    aGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCa                                                                                                  <  1:10875308/101‑1 (MQ=255)
     gTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGAACCCATCAATGCAc                                                                                                 >  1:14092802/1‑101 (MQ=255)
        aaCGACAACAGCACGTTCCATACCAGTACCAACCAGCGGCGTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGt                                                                                              <  1:11383797/101‑1 (MQ=255)
         aCGGCAACAGCACGTTCCATACCAGTACCAACAAGCGGCTTAAAAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGtt                                                                                             >  1:8197409/1‑101 (MQ=255)
          cGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTg                                                                                            <  1:8659467/101‑1 (MQ=255)
           ggCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTgg                                                                                           <  1:4887318/101‑1 (MQ=255)
           ggCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTgg                                                                                           >  1:496318/1‑101 (MQ=255)
            gCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGc                                                                                          <  1:12449987/101‑1 (MQ=255)
             cAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCg                                                                                         >  1:2513244/1‑101 (MQ=255)
             cAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCg                                                                                         >  1:4354284/1‑101 (MQ=255)
                 aGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCAt                                                                                     >  1:10583113/1‑101 (MQ=255)
                    aCGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCgt                                                                                  >  1:11850453/1‑101 (MQ=255)
                     cGTTACATACCAGTACAAACCAGCGGCTTATCAGCGCGCAGAGTCGGAAAGGCCTGACGTTGCATGTTCGCACCCCTCAATGCAGGGTTGGCGTCATCttg                                                                                 >  1:1944301/1‑101 (MQ=255)
                      gTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCgtgt                                                                                >  1:10798199/1‑101 (MQ=255)
                       ttCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGtt                                                                               <  1:11021968/101‑1 (MQ=255)
                        tCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTc                                                                              <  1:3392626/101‑1 (MQ=255)
                        tCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTc                                                                              >  1:3798355/1‑101 (MQ=255)
                         ccATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTcc                                                                             <  1:6375759/101‑1 (MQ=255)
                          cATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCa                                                                            <  1:12049552/101‑1 (MQ=255)
                          cATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCa                                                                            >  1:6326470/1‑101 (MQ=255)
                           aTACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAg                                                                           <  1:7948050/101‑1 (MQ=255)
                            tACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAgg                                                                          <  1:2014317/101‑1 (MQ=255)
                              ccAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGaa                                                                        >  1:11927079/1‑101 (MQ=255)
                                  tACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACggg                                                                    <  1:3859961/101‑1 (MQ=255)
                                  tACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACggg                                                                    <  1:13725576/101‑1 (MQ=255)
                                   accaaccaGCAGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGa                                                                   <  1:941047/101‑1 (MQ=255)
                                    ccaaccaGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGAt                                                                  <  1:342302/101‑1 (MQ=255)
                                     caaccaGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATc                                                                 >  1:5042756/1‑101 (MQ=255)
                                       accaGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAg                                                               >  1:5594923/1‑101 (MQ=255)
                                        ccaGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAgg                                                              >  1:2484529/1‑101 (MQ=255)
                                        ccaGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAgg                                                              >  1:2756840/1‑101 (MQ=255)
                                        ccaGCGGCTTAGCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAgg                                                              <  1:7537470/101‑1 (MQ=255)
                                             ggCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGc                                                         >  1:8556685/1‑101 (MQ=255)
                                               cTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCAc                                                       <  1:269447/101‑1 (MQ=255)
                                                ttATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCAcc                                                      >  1:401207/1‑101 (MQ=255)
                                                ttATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCAcc                                                      >  1:4300992/1‑101 (MQ=255)
                                                  aTCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGa                                                    >  1:1802954/1‑101 (MQ=255)
                                                   tCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGAc                                                   <  1:705998/101‑1 (MQ=255)
                                                    cAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACg                                                  >  1:10967403/1‑101 (MQ=255)
                                                    cAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACACATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACg                                                  >  1:5163444/1‑101 (MQ=255)
                                                     aGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACgg                                                 >  1:11519721/1‑101 (MQ=255)
                                                      gcgcgcAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGa                                                <  1:557770/101‑1 (MQ=255)
                                                       cgcgcAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGAt                                               <  1:5871429/101‑1 (MQ=255)
                                                         cgcAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATac                                             >  1:12767388/1‑101 (MQ=255)
                                                          gcAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATacc                                            <  1:4458441/101‑1 (MQ=255)
                                                           cagtagcGGCACAGCCTGACGCTGCATGTTCGCACCCATCAGGGCACGGTTAGCGTCGTCGTGCTCGAGGAACGGAATCATGGCAGTAGCCACGGAGacca                                           >  1:894674/7‑101 (MQ=255)
                                                           cAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATacca                                           >  1:4576851/1‑101 (MQ=255)
                                                            agagTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATaccac                                          >  1:11287039/1‑101 (MQ=255)
                                                            agagTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATaccac                                          <  1:10062955/101‑1 (MQ=255)
                                                            agagTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATaccac                                          >  1:12497207/1‑101 (MQ=255)
                                                             gagTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATaccacc                                         >  1:2178761/1‑101 (MQ=255)
                                                              agTCGGAACGGCCTGATGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACct                                        <  1:3152317/101‑1 (MQ=255)
                                                              agTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACct                                        <  1:5686505/101‑1 (MQ=255)
                                                               gTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctg                                       <  1:6962769/101‑1 (MQ=255)
                                                               gTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctg                                       >  1:8323276/1‑101 (MQ=255)
                                                                tCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctgc                                      >  1:1069521/1‑101 (MQ=255)
                                                                 cGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctgct                                     <  1:4775157/101‑1 (MQ=255)
                                                                  ggAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctgctg                                    >  1:7088340/1‑101 (MQ=255)
                                                                  ggAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACctgctg                                    >  1:8396510/1‑101 (MQ=255)
                                                                   gcacagCCTGACGCTGCATGTTCGCACCCATCAGGGCACGGTTAGCGTCGTCGTGCTCGAGGAACGGAATCATGGCAGTAGCCACGGAGACCATctgacgc                                   >  1:7813357/6‑97 (MQ=255)
                                                                    cacagCCTGACGCTGCATGTTCGCACCCATCAGGGCACGGTTAGCGTCGTCGTGATCGAGGAACGGAATCATGGCAGTAGCCACGGAGACCATctgacgcg                                  <  1:2607823/97‑6 (MQ=255)
                                                                    aaCGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTggg                                  >  1:2570263/1‑101 (MQ=255)
                                                                    aaCGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTggg                                  <  1:11793914/101‑1 (MQ=255)
                                                                    aaCGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTggg                                  >  1:7689329/1‑101 (MQ=255)
                                                                      cagCCTGACGCTGCATGTTCGCACCCATCAGGGCACGGTTAGCGTCGTCGTGCTCGAGGAACGGAATCATGGCAGTAGCCACGGAGACCATctgacgcggg                                >  1:6780496/3‑94 (MQ=255)
                                                                      cGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTg                                <  1:9110724/101‑1 (MQ=255)
                                                                       ggCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTgg                               <  1:6683175/101‑1 (MQ=255)
                                                                        gCCTGACGTTGCATGTTCACACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGa                              <  1:12239564/101‑1 (MQ=255)
                                                                            gACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACg                          <  1:13343739/101‑1 (MQ=255)
                                                                             aCGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGt                         <  1:13061003/101‑1 (MQ=255)
                                                                             aCGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGt                         >  1:10160440/1‑101 (MQ=255)
                                                                               gTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTcc                       <  1:1310363/101‑1 (MQ=255)
                                                                               gTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTcc                       <  1:1773430/101‑1 (MQ=255)
                                                                                ttGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCa                      >  1:13568192/1‑101 (MQ=255)
                                                                                  gCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATg                    <  1:2841610/101‑1 (MQ=255)
                                                                                   cATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGt                   >  1:14182162/1‑101 (MQ=255)
                                                                                    aTGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTa                  >  1:10325437/1‑101 (MQ=255)
                                                                                     tGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAg                 >  1:6065106/1‑101 (MQ=255)
                                                                                     tGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAg                 <  1:5394261/101‑1 (MQ=255)
                                                                                     tGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAg                 <  1:3032389/101‑1 (MQ=255)
                                                                                      gTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGt                >  1:671775/1‑101 (MQ=255)
                                                                                        tCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCa              >  1:9515000/1‑101 (MQ=255)
                                                                                         cGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCGGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCaa             <  1:9882230/101‑1 (MQ=255)
                                                                                           caaccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAAcc           >  1:563095/4‑101 (MQ=255)
                                                                                           cACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAAcc           >  1:10080723/1‑101 (MQ=255)
                                                                                             cccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTg         <  1:9435961/101‑1 (MQ=255)
                                                                                             cccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTg         >  1:9728367/1‑101 (MQ=255)
                                                                                             cccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTg         >  1:9738062/1‑101 (MQ=255)
                                                                                             cccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTg         <  1:3538789/101‑1 (MQ=255)
                                                                                              ccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTgg        >  1:1454592/1‑101 (MQ=255)
                                                                                              ccATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTgg        <  1:8755922/101‑1 (MQ=255)
                                                                                               cATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGt       >  1:3948753/1‑101 (MQ=255)
                                                                                                aTCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTc      >  1:5172983/1‑101 (MQ=255)
                                                                                                aTCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTc      <  1:329347/101‑1 (MQ=255)
                                                                                                 tCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTcg     >  1:13817212/1‑101 (MQ=255)
                                                                                                  cAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGCTCAGGGACGCACCGACGGATCCCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTcgc    >  1:11736891/1‑101 (MQ=255)
                                                                                                    aTGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTCGCgg  <  1:4428912/101‑1 (MQ=255)
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CCGGAGTCAACGGCAACAGCACGTTCCATACCAGTACCAACCAGCGGCTTATCAGCGCGCAGAGTCGGAACGGCCTGACGTTGCATGTTCGCACCCATCAATGCACGGTTGGCGTCATCGTGTTCCAGGAACGGGATCAGGGACGCACCGACGGATACCACCTGCTGGGTGGATACGTCCATGTAGTCAACCTGGTCGCGG  >  NC_007779/3453299‑3453499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.