| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,908 | G→T | 34.1% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,908 | 0 | G→T | 34.1% | 310.7 ‑4.0 ‑0.0 | 296 | noncoding (1138/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (67/34): ref base (101/94): total (168/128) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.88e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.62e-01 | ||||||||||
Only 100 of 318 total aligned reads displayed.
TGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224808‑224990 | tgtgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccg < 1:14288887/101‑1 (MQ=34)tgtgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccg > 1:3092278/1‑101 (MQ=33)tgtgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccg < 1:5893182/101‑1 (MQ=34) gtgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccgg < 1:4836821/101‑1 (MQ=33) gagaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccggcc > 1:8034682/1‑101 (MQ=32) agaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccggccg < 1:2290150/101‑1 (MQ=33) agaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccggccg < 1:11706379/101‑1 (MQ=33) gaCAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTccggccgg > 1:5470731/1‑101 (MQ=32) aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGaa > 1:10296932/1‑101 (MQ=32) aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGaa < 1:9959662/101‑1 (MQ=33) ggTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAAc < 1:8306415/101‑1 (MQ=33) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACt > 1:14823884/1‑101 (MQ=32) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa > 1:11110769/1‑101 (MQ=32) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa < 1:3275064/101‑1 (MQ=33) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa > 1:9288491/1‑101 (MQ=32) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa > 1:15100232/1‑101 (MQ=32) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaaa < 1:13817385/101‑1 (MQ=33) gcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAg < 1:4059401/101‑1 (MQ=33) gcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAg < 1:2338554/101‑1 (MQ=32) cATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAgg > 1:12090074/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga > 1:5243041/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga > 1:3561224/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga < 1:10237479/101‑1 (MQ=33) gCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGAc > 1:10727797/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg > 1:4223715/1‑101 (MQ=32) tcgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGcc > 1:8719743/1‑101 (MQ=32) cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCa > 1:8901432/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg < 1:3737675/101‑1 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:12861624/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:9788601/1‑101 (MQ=32) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTg < 1:7913462/101‑1 (MQ=32) aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGa > 1:1536829/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:7689749/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa < 1:3456723/101‑1 (MQ=32) cGTGTTGTGAAATGTTGGGTTAGGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa > 1:4144662/1‑101 (MQ=17) cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa > 1:13938631/1‑101 (MQ=32) cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa < 1:2447245/101‑1 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g < 1:2695056/101‑1 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g > 1:1730212/1‑101 (MQ=32) tgtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gga > 1:7480731/1‑101 (MQ=33) gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggag < 1:8490877/101‑1 (MQ=32) tgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagg > 1:9557764/1‑101 (MQ=32) gTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTg > 1:1368628/1‑101 (MQ=33) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg > 1:12335287/1‑101 (MQ=33) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg < 1:6926778/101‑1 (MQ=32) ttGCGTTAAGGCCGGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg < 1:7638498/101‑1 (MQ=255) ggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGa < 1:7011487/101‑1 (MQ=32) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:3325570/1‑101 (MQ=2) gTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGAt > 1:4335639/1‑101 (MQ=33) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGa > 1:14919776/1‑101 (MQ=33) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGa > 1:14103126/1‑101 (MQ=33) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:12506198/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:7139193/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc > 1:6557497/1‑101 (MQ=33) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAc > 1:13255388/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:2923112/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt > 1:12269629/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:3369832/1‑101 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa > 1:8158103/1‑101 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCa < 1:14695516/101‑1 (MQ=2) cGCCACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa < 1:3012074/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:6115643/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:1665840/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaa < 1:7573479/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACACAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAg > 1:5028699/1‑101 (MQ=18) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGTGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:14625844/1‑100 (MQ=2) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:14425244/1‑100 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:2069707/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12797919/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat < 1:10823720/101‑3 (MQ=2) cAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtc < 1:2140454/101‑1 (MQ=32) aaCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc < 1:5533673/101‑1 (MQ=255) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:13123209/101‑1 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:4556658/1‑101 (MQ=33) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:11601793/1‑101 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:10537321/1‑101 (MQ=255) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:11824766/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑G‑TTGTGGTGGGG‑ACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9488718/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:13172334/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9699476/1‑101 (MQ=2) cGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatc < 1:5644108/101‑1 (MQ=32) gAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatc > 1:8789474/1‑101 (MQ=2) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatca > 1:1128215/1‑101 (MQ=2) aGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGCCTGCCAGTGATAAACT‑GGAGGAAGGGGGGGAGGAGGTCAGTtcatcag > 1:11474400/1‑100 (MQ=11) aGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat < 1:7068679/101‑1 (MQ=32) gcgcAACCCTTGTCTTATGTTGCCAGC‑C‑A‑GTTGGGGTTGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGGGGAAGGTGGGGATGACGTCAAATcatcat < 1:11241195/101‑1 (MQ=2) gcgcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATcatcat < 1:4604017/101‑1 (MQ=2) cgcATCCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:9091600/101‑1 (MQ=2) cgcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGCGGAAGGTGGGGATGACGTCAAGTCATCATgg > 1:5746335/1‑101 (MQ=18) gcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATgc < 1:3128822/101‑2 (MQ=2) gcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATgc > 1:13529460/1‑100 (MQ=2) gcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc > 1:10762940/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:8346063/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:182974/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:3810838/1‑101 (MQ=32) ccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:11877573/101‑1 (MQ=32) ccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:6361172/101‑1 (MQ=32) cTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc > 1:7284629/1‑101 (MQ=32) tATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa > 1:7885086/1‑101 (MQ=32) cTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa < 1:4699407/101‑1 (MQ=31) | TGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224808‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |