| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,915 | A→G | 34.5% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,915 | 0 | A→G | 34.5% | 313.8 ‑3.4 ‑0.4 | 290 | noncoding (1145/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (66/34): ref base (99/90): total (166/124) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.35e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.13e-01 | ||||||||||
Only 100 of 297 total aligned reads displayed.
CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224815‑224990 | aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGac > 1:2358829/1‑100 (MQ=17) aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGaa < 1:9959662/101‑1 (MQ=33) aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGaa > 1:10296932/1‑101 (MQ=32) ggTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAAc > 1:8026786/1‑101 (MQ=32) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa > 1:11110769/1‑101 (MQ=32) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaa > 1:15100232/1‑101 (MQ=32) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCaaa > 1:14106840/1‑101 (MQ=32) cATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAgg > 1:12090074/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga > 1:5243041/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga > 1:3561224/1‑101 (MQ=32) aTGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGga < 1:10237479/101‑1 (MQ=33) tGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCAGGGAACTCAAAGgag < 1:9048313/101‑1 (MQ=18) gCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGAc > 1:15012657/1‑101 (MQ=32) tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTg < 1:464393/101‑1 (MQ=33) tcgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGcc > 1:8719743/1‑101 (MQ=32) cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCa > 1:3275239/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg < 1:3737675/101‑1 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:12861624/1‑101 (MQ=32) gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAg > 1:9788601/1‑101 (MQ=32) aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGa > 1:1536829/1‑101 (MQ=32) aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGa > 1:4169562/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:7689749/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:4018841/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa < 1:3456723/101‑1 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g > 1:1073430/1‑101 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g > 1:1730212/1‑101 (MQ=32) tgtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑gga > 1:7480731/1‑101 (MQ=33) gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggag < 1:227688/101‑1 (MQ=32) gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggag < 1:8490877/101‑1 (MQ=32) tgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagg > 1:9557764/1‑101 (MQ=32) gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagga < 1:14807689/101‑1 (MQ=32) gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagga < 1:11808385/101‑1 (MQ=32) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg < 1:6926778/101‑1 (MQ=32) ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg > 1:12335287/1‑101 (MQ=33) ttGCGTTAAGGCCGGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgg < 1:7638498/101‑1 (MQ=255) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg > 1:13215874/1‑101 (MQ=33) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg < 1:4448702/101‑1 (MQ=32) gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTgggg < 1:14912218/101‑1 (MQ=32) ggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGa < 1:7011487/101‑1 (MQ=32) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa > 1:3325570/1‑101 (MQ=2) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa < 1:1967432/101‑1 (MQ=2) ttAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATg < 1:9377643/101‑1 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:7139193/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:12506198/1‑101 (MQ=2) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAc > 1:10802414/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:2923112/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt > 1:5508128/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGt > 1:12269629/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc < 1:5631126/101‑1 (MQ=32) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc < 1:2698756/101‑1 (MQ=32) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:10848086/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:3369832/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:14372249/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa < 1:10592969/101‑1 (MQ=32) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa > 1:8158103/1‑101 (MQ=2) cGCCACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa < 1:3012074/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:6115643/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:1665840/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaa < 1:7573479/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:790936/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACACAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAg > 1:5028699/1‑101 (MQ=18) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:8364812/1‑100 (MQ=2) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:4329060/1‑100 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12797919/1‑99 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:406538/1‑101 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:3207203/1‑101 (MQ=255) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:13570961/101‑1 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:13123209/101‑1 (MQ=32) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:11601793/1‑101 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:13736129/1‑101 (MQ=255) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAAtca < 1:5689020/101‑1 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:11824766/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑G‑TTGTGGTGGGG‑ACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9488718/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9699476/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:2100405/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACATCAAAtcat < 1:481506/101‑1 (MQ=255) cGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatc > 1:14033755/1‑101 (MQ=33) gAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatc > 1:6404023/1‑101 (MQ=2) gAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatc < 1:1386992/101‑1 (MQ=2) gAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca > 1:2611763/1‑101 (MQ=33) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatca < 1:9148903/101‑1 (MQ=2) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatca > 1:1128215/1‑101 (MQ=2) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcatca < 1:1469158/101‑1 (MQ=2) aGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGCCTGCCAGTGATAAACT‑GGAGGAAGGGGGGGAGGAGGTCAGTtcatcag > 1:11474400/1‑100 (MQ=11) aGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat < 1:7068679/101‑1 (MQ=32) gcgcAACCCTTGTCTTATGTTGCCAGC‑C‑A‑GTTGGGGTTGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGGGGAAGGTGGGGATGACGTCAAATcatcat < 1:11241195/101‑1 (MQ=2) gcgcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATcatcat < 1:4604017/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg > 1:8339548/1‑101 (MQ=2) cAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:182974/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:5481315/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:3810838/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:8794534/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 1:3114711/101‑1 (MQ=32) ccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:11877573/101‑1 (MQ=32) ccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:6361172/101‑1 (MQ=32) cTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc > 1:7284629/1‑101 (MQ=32) ttATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg < 1:5884058/101‑1 (MQ=32) tATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa < 1:13363932/101‑1 (MQ=32) tATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa > 1:7885086/1‑101 (MQ=32) cTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGACCTTACGACCa > 1:14465661/1‑101 (MQ=14) | CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224815‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |