| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 224,937 | A→T | 39.5% | noncoding (1167/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 224,937 | 0 | A→T | 39.5% | 260.9 ‑5.3 0.0 | 231 | noncoding (1167/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): new base (65/25): ref base (69/62): total (134/97) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.92e-03 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 239 total aligned reads displayed.
AGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224837‑224990 | aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGa > 1:4169562/1‑101 (MQ=32)aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGa > 1:1536829/1‑101 (MQ=32) gCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAt > 1:4018841/1‑101 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa < 1:3456723/101‑1 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa < 1:11373322/101‑1 (MQ=32) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATa > 1:6995967/1‑101 (MQ=32) cGTGTTGTGAAATGTTGGGTTAGGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa > 1:4144662/1‑101 (MQ=17) cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa > 1:13938631/1‑101 (MQ=32) cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATaaa < 1:3025758/101‑1 (MQ=32) tgttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACt < 1:14967489/101‑1 (MQ=32) tgttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACt < 1:12295779/101‑1 (MQ=32) tgttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACt < 1:8723611/101‑1 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g < 1:2695056/101‑1 (MQ=32) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑g > 1:14083849/1‑101 (MQ=32) ttgtGAAATGTTGGGTTAAGTCCCGCAACGAGAGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGCACTCAAAGGAGACTGCCAGTGATAAACT‑gg > 1:6062233/1‑101 (MQ=12) gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑ggagga < 1:11808385/101‑1 (MQ=32) aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGaa > 1:7118751/1‑101 (MQ=32) gTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTg > 1:1368628/1‑101 (MQ=33) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg > 1:13215874/1‑101 (MQ=33) tGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTggg < 1:4448702/101‑1 (MQ=32) ggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGa < 1:7011487/101‑1 (MQ=32) gTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGa < 1:1967432/101‑1 (MQ=2) gTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGAt > 1:4335639/1‑101 (MQ=33) ttAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATg > 1:9541269/1‑101 (MQ=32) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa < 1:8408253/101‑1 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGa > 1:7139193/1‑101 (MQ=2) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGACCTCAAAGGGGACTGCCAGGGATAAACT‑GGAGAAAGGTGGGGATGag > 1:12384642/1‑100 (MQ=11) aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGAc > 1:6557497/1‑101 (MQ=33) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAc > 1:1416745/1‑101 (MQ=2) aGTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAc > 1:13255388/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:6322633/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:1870943/1‑101 (MQ=2) gTCCCGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACg > 1:2923112/1‑101 (MQ=2) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc > 1:14829211/1‑101 (MQ=33) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTc < 1:8155690/101‑1 (MQ=32) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:3369832/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:1705614/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:10267797/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTc > 1:1757437/1‑101 (MQ=2) cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCa > 1:8508340/1‑101 (MQ=33) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa < 1:9812015/101‑1 (MQ=2) ccGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCa > 1:12621661/1‑101 (MQ=2) ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCaa > 1:7525210/1‑101 (MQ=33) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:1665840/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaa < 1:7573479/101‑1 (MQ=2) cGCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaa > 1:11689713/1‑101 (MQ=2) cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACACAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAg > 1:5028699/1‑101 (MQ=18) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGTGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:14625844/1‑100 (MQ=2) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:14425244/1‑100 (MQ=2) gCAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaa > 1:6372330/1‑100 (MQ=2) gCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGt > 1:7626131/1‑101 (MQ=33) gCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGt < 1:3938455/101‑1 (MQ=32) gCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGt < 1:730919/101‑1 (MQ=32) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:12800556/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat < 1:10823720/101‑3 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCaaat > 1:11594644/1‑99 (MQ=2) cAACGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCaaat < 1:3534264/101‑3 (MQ=2) cAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtc > 1:3339860/1‑101 (MQ=33) aaCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:7722506/1‑101 (MQ=2) aaCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtc > 1:3207203/1‑101 (MQ=255) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca > 1:312224/1‑101 (MQ=33) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:13570961/101‑1 (MQ=32) aaCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtca < 1:13123209/101‑1 (MQ=32) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGAGGTCAAAtca < 1:2995410/101‑1 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:10537321/1‑101 (MQ=255) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGG‑TTAACTCGGAGGAAGGTGGGGATGACGTCAAAtca < 1:5689020/101‑1 (MQ=2) aCGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑C‑ACGTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtca > 1:11824766/1‑101 (MQ=2) aCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcat > 1:3313411/1‑101 (MQ=33) aCGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcat > 1:7896645/1‑101 (MQ=33) cGAGCGCAACCCTTGTCTTATGTTGCCAGCAC‑G‑TTGTGGTGGGG‑ACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9488718/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:2100405/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:5490313/1‑101 (MQ=2) cGAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat > 1:9699476/1‑101 (MQ=2) cGAGCGCAACCCTTGTATTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcat < 1:9390749/101‑1 (MQ=2) cGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatc < 1:5644108/101‑1 (MQ=32) gAGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatc > 1:11260155/1‑101 (MQ=2) gAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca > 1:2611763/1‑101 (MQ=33) gAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca > 1:1514333/1‑101 (MQ=33) gAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGtcatca > 1:3792444/1‑101 (MQ=33) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAAtcatca > 1:8021381/1‑101 (MQ=2) aGCGCAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCC‑GGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAAtcatca < 1:528770/101‑1 (MQ=2) aGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTcatcat < 1:8814654/101‑1 (MQ=32) gcgcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATg < 1:11187351/101‑1 (MQ=32) cgcATCCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg < 1:9091600/101‑1 (MQ=2) cgcAACCCTTGTCTTATGTTGCCAG‑‑CAC‑GTTGTGGTGGGGACTCGTAAGAAACTGCCGGGGTTAACTC‑GGAGGAAGGTGGGGATGACGTCAAATCATCATg > 1:8339548/1‑101 (MQ=2) cgcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATgg < 1:10668324/101‑1 (MQ=32) gcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc > 1:13742166/1‑101 (MQ=32) gcAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc > 1:10762940/1‑101 (MQ=32) cAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc > 1:8346063/1‑101 (MQ=32) aaCCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGccc > 1:7675972/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt > 1:4870501/1‑101 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 1:1478896/101‑1 (MQ=32) cccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGGGGCGATGACGTCAAGTCATCATGGCCCtt > 1:12095070/1‑101 (MQ=12) ccTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa < 1:11877573/101‑1 (MQ=32) cTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc > 1:2144383/1‑101 (MQ=32) cTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTAc < 1:4601731/101‑1 (MQ=32) ttATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg < 1:5884058/101‑1 (MQ=32) aTCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc < 1:5550027/101‑1 (MQ=32) aTCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc > 1:2299803/1‑101 (MQ=32) ttttGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg > 1:4774339/1‑101 (MQ=11) | AGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAG‑‑C‑G‑GTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACT‑GGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAG > NC_007779/224837‑224990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |