| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 1,485,417 | G→C | 11.3% | E196Q (GAG→CAG) | hrpA → | ATP‑dependent helicase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,485,417 | 0 | G→C | 11.3% | 97.5 ‑1.3 ‑0.0 | 291 | E196Q (GAG→CAG) | hrpA | ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): new base (22/11): ref base (141/117): total (163/128) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.64e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.07e-01 | ||||||||||
Only 100 of 305 total aligned reads displayed.
GATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGA > NC_007779/1485317‑1485517 | gaTCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag > 1:10249893/1‑101 (MQ=255)gaTCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag < 1:13967165/101‑1 (MQ=255) tCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag‑ag > 1:3945132/1‑101 (MQ=255) tCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag‑ag < 1:5469780/101‑1 (MQ=255) tCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAag‑ag > 1:1300767/1‑101 (MQ=255) ccAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGt < 1:9283861/101‑1 (MQ=255) ccAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGt < 1:11424631/101‑1 (MQ=255) ccAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGt < 1:5563301/101‑1 (MQ=255) cAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGtt < 1:262700/101‑1 (MQ=255) aGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTtg > 1:3357257/1‑101 (MQ=255) cAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTtgct < 1:14924088/101‑1 (MQ=255) cAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTtgct > 1:13176394/1‑101 (MQ=255) aaGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTtgctg > 1:3156792/1‑101 (MQ=255) aaGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTtgctg < 1:12439250/101‑1 (MQ=255) ccGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCcgc < 1:194799/101‑1 (MQ=255) cGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCcgcg < 1:6607050/101‑1 (MQ=255) cGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCcgcg > 1:11955350/1‑101 (MQ=255) cGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCcgcg < 1:9725121/101‑1 (MQ=255) gCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcgg < 1:2789391/101‑1 (MQ=255) gCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcgg > 1:2478575/1‑101 (MQ=255) gCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcgg > 1:8503504/1‑101 (MQ=255) ccTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcggc > 1:2603289/1‑101 (MQ=255) ccTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcggc < 1:8811653/101‑1 (MQ=255) ctgctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcggcg > 1:6086091/1‑101 (MQ=255) ctgctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCgcggcg > 1:3268442/1‑101 (MQ=255) tgctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGt > 1:14466937/1‑101 (MQ=255) cgtgaGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGa > 1:806806/5‑101 (MQ=255) cAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCt < 1:963632/101‑1 (MQ=255) cAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCt < 1:9507275/101‑1 (MQ=255) aGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTa > 1:13337829/1‑101 (MQ=255) aGTACGACACCATCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCtg > 1:525263/1‑100 (MQ=255) gTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTaa > 1:2824217/1‑101 (MQ=255) tACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTaaa > 1:7541039/1‑101 (MQ=255) cGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTaaaaa < 1:7731715/101‑1 (MQ=255) acacTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATc < 1:12868114/101‑1 (MQ=255) acacTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATc > 1:3532770/1‑101 (MQ=255) caTCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTa > 1:7170792/2‑101 (MQ=255) aTCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTAt > 1:9006323/1‑101 (MQ=255) aTCATCATCGATGAGGCGCACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTAt < 1:1452938/101‑1 (MQ=255) ttattGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACt > 1:1167372/1‑101 (MQ=255) ttGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTcc > 1:1839522/1‑101 (MQ=255) cgatgaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTcgg > 1:572106/8‑99 (MQ=255) cgatgaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTT‑AAAGCATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTcgg < 1:2418693/94‑3 (MQ=255) gACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCcgc < 1:5322772/101‑1 (MQ=255) atgaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCggcg > 1:12623564/6‑101 (MQ=255) atgaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCggcg > 1:12319636/6‑101 (MQ=255) tgaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCGGCGa < 1:14154234/97‑1 (MQ=255) cGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGa < 1:7027874/101‑1 (MQ=255) cGAAGCGCACGAACGCAGCCTGAATATCGATTTTGTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGa < 1:3050549/101‑1 (MQ=255) gaggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCGGCGAc < 1:4595494/98‑1 (MQ=255) gAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGAc > 1:13225163/1‑101 (MQ=255) gAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCCGACCTAAAAATCATTATCACTTCCGCGAc < 1:10026633/101‑1 (MQ=255) gAAGCGCACGAACGCAGCCTGAATATCAATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGAc > 1:14706133/1‑101 (MQ=255) aggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTTAAAGC‑ATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCGGCGAcg < 1:1030276/99‑2 (MQ=255) aggcgcACGAACGCAGCCTCAACATCGACTTCCTGCTGGGATATTT‑AAAGCATATTCTGCCGCAGCGCCCAGATCTGAAGATCATTATCACTTCGGCGAcg > 1:13538455/3‑100 (MQ=255) cgcACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATc > 1:12709456/1‑101 (MQ=255) aCGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGAc < 1:7767123/101‑1 (MQ=255) aCGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGAc > 1:1554405/1‑101 (MQ=255) aCGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGAc > 1:14878246/1‑101 (MQ=255) cGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGAcc > 1:13757528/1‑101 (MQ=255) cGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGAcc < 1:6815591/101‑1 (MQ=255) aaCGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCg > 1:12951342/1‑101 (MQ=255) cAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAAc > 1:10919546/1‑101 (MQ=255) cAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAAc < 1:1083629/101‑1 (MQ=255) cTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCtt > 1:6026550/1‑101 (MQ=255) tGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCttt > 1:4242211/1‑101 (MQ=255) gAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCtttt > 1:8634331/1‑101 (MQ=255) gAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCtttt > 1:8853200/1‑101 (MQ=255) aaTATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTc < 1:6307069/101‑1 (MQ=255) atatCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTcg > 1:830541/1‑101 (MQ=255) tatCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTcgc > 1:5666068/1‑101 (MQ=255) atCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTcgcg < 1:223373/101‑1 (MQ=255) atCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTcgcg > 1:5879413/1‑101 (MQ=255) tCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCgcgc > 1:2574735/1‑101 (MQ=255) cGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGcc > 1:8120677/1‑101 (MQ=255) gATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCa > 1:7933610/1‑101 (MQ=255) gATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCa > 1:11575893/1‑101 (MQ=255) gATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCa < 1:3975161/101‑1 (MQ=255) gATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCa > 1:12177962/1‑101 (MQ=255) aTTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCAc > 1:11001739/1‑101 (MQ=255) ttttttGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACt > 1:10679974/1‑101 (MQ=255) ttttGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACttt > 1:6153996/1‑101 (MQ=255) ttttGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACttt < 1:9256051/101‑1 (MQ=255) tttGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTta < 1:11128360/101‑1 (MQ=255) tttGCTCGGCTATTTGAAAG‑AGTTGCTGCCACGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTta > 1:9211460/1‑101 (MQ=255) ttGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTtaa < 1:11266621/101‑1 (MQ=255) cTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTtaataa > 1:4675559/1‑101 (MQ=255) tCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTaataat < 1:11142085/101‑1 (MQ=255) tCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTaataat < 1:4127897/101‑1 (MQ=255) tCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTaataat > 1:3699074/1‑101 (MQ=255) cGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATg > 1:10441964/1‑101 (MQ=255) ggCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATgc < 1:7705736/101‑1 (MQ=255) ggCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATgc < 1:10728694/101‑1 (MQ=255) cTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATgcgc > 1:9830221/1‑101 (MQ=255) tttGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGa < 1:14422349/101‑1 (MQ=255) aaaG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGattat < 1:4826691/101‑1 (MQ=255) aaaG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGattat > 1:14571441/1‑101 (MQ=255) ag‑agTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTg > 1:7310427/1‑101 (MQ=255) ag‑agTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTg > 1:3454943/1‑101 (MQ=255) g‑agTTGCTGCCGCGGCGTCCTGACCTAAAAAGCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGa < 1:12130959/101‑1 (MQ=255) | GATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAG‑AGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGA > NC_007779/1485317‑1485517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |