mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 706,385 | 1 | .→T | 2.0% | 17.3 ‑2.8 ‑0.8 | 244 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 34,111 | 1 | .→T | 1.7% | 12.6 ‑0.5 ‑0.1 | 242 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 149,550 | 1 | .→T | 1.6% | 12.6 ‑1.1 ‑0.4 | 253 | coding (52/795 nt) | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| * | NC_007779 | 194,839 | 1 | .→T | 1.2% | 7.3 0.0 ‑0.1 | 248 | intergenic (+122/‑64) | dxr/ispU | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
| * | NC_007779 | 4,179,625 | 1 | .→G | 0.8% | 3.2 ‑0.7 ‑0.4 | 250 | coding (975/1197 nt) | gspF | general secretory pathway component, cryptic |
| * | NC_007779 | 3,375,744 | 1 | .→G | 0.8% | 3.1 ‑1.5 ‑1.0 | 245 | coding (1021/1368 nt) | dcuD | transporter |
| * | NC_007779 | 3,333,608 | 1 | .→G | 0.9% | 3.0 ‑1.6 ‑0.1 | 229 | coding (44/972 nt) | ispB | octaprenyl diphosphate synthase |
| * | NC_007779 | 2,107,010 | 1 | .→A | 0.9% | 2.9 ‑0.6 ‑0.3 | 230 | coding (212/591 nt) | wbbJ | acyl transferase |
| * | NC_007779 | 4,477,098 | 1 | .→A | 0.9% | 2.9 ‑0.7 ‑0.2 | 235 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 63,418 | 1 | .→T | 0.8% | 2.8 0.0 ‑1.3 | 241 | intergenic (‑154/+11) | hepA/polB | RNA polymerase‑associated helicase protein/DNA polymerase II |
| * | NC_007779 | 49,800 | 1 | .→T | 0.8% | 2.7 ‑1.5 ‑0.7 | 240 | intergenic (+169/‑23) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| * | NC_007779 | 3,689,613 | 1 | .→A | 0.8% | 2.7 ‑1.6 ‑0.9 | 243 | intergenic (+60/+36) | hdfR/trpT | DNA‑binding transcriptional regulator/tRNA‑Trp |
| * | NC_007779 | 3,792,854 | 1 | .→T | 0.9% | 2.7 ‑0.7 ‑1.1 | 235 | coding (1064/1320 nt) | uhpC | membrane protein regulates uhpT expression |
| * | NC_007779 | 93,022 | 1 | .→G | 0.9% | 2.6 ‑1.4 ‑0.0 | 233 | coding (1610/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis |
| * | NC_007779 | 1,759,411 | 1 | .→T | 0.8% | 2.6 ‑0.7 ‑0.7 | 258 | intergenic (+40/+24) | lpp/ynhG | murein lipoprotein/hypothetical protein |
| * | NC_007779 | 3,701,392 | 1 | .→T | 0.9% | 2.6 ‑1.6 ‑0.9 | 227 | coding (2/966 nt) | rbsC | D‑ribose transporter subunit |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.7% | 2.5 0.0 ‑0.7 | 275 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 1,005,043 | 1 | .→G | 0.9% | 2.4 ‑1.5 ‑0.0 | 229 | coding (675/711 nt) | ycbF | periplasmic pilini chaperone |
| * | NC_007779 | 3,385,700 | 1 | .→T | 0.9% | 2.3 0.0 ‑0.3 | 231 | intergenic (+44/+12) | yhcN/yhcO | hypothetical protein/barnase inhibitor |
| * | NC_007779 | 1,772,183 | 1 | .→T | 0.8% | 2.2 ‑0.7 ‑0.2 | 249 | intergenic (+283/‑146) | ydiK/ydiL | inner membrane protein/hypothetical protein |
| * | NC_007779 | 730,397 | 0 | C→A | 100.0% | ‑0.5 | 1 | D131E (GAC→GAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,398 | 0 | G→A | 100.0% | ‑0.5 | 1 | G132S (GGT→AGT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,399 | 0 | G→A | 100.0% | ‑0.5 | 1 | G132D (GGT→GAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,400 | 0 | T→A | 100.0% | ‑0.5 | 1 | G132G (GGT→GGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,401 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y133N (TAC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,403 | 0 | C→A | 100.0% | ‑0.5 | 1 | Y133* (TAC→TAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,405 | 0 | G→A | 100.0% | ‑0.5 | 1 | S134N (AGC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,406 | 0 | C→A | 100.0% | ‑0.5 | 1 | S134R (AGC→AGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,407 | 0 | C→A | 100.0% | ‑0.5 | 1 | R135S (CGC→AGC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,408 | 0 | G→A | 100.0% | ‑0.5 | 1 | R135H (CGC→CAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,409 | 0 | C→A | 100.0% | ‑0.5 | 1 | R135R (CGC→CGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,411 | 0 | G→A | 100.0% | ‑0.5 | 1 | S136N (AGC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,412 | 0 | C→A | 100.0% | ‑0.5 | 1 | S136R (AGC→AGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,413 | 0 | G→A | 100.0% | ‑0.5 | 1 | E137K (GAG→AAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,415 | 0 | G→A | 100.0% | ‑0.5 | 1 | E137E (GAG→GAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,416 | 0 | T→A | 100.0% | ‑0.5 | 1 | S138T (TCA→ACA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,417 | 0 | C→A | 100.0% | ‑0.5 | 1 | S138* (TCA→TAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,419 | 0 | C→A | 100.0% | ‑0.5 | 1 | L139M (CTG→ATG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,420 | 0 | T→A | 100.0% | ‑0.5 | 1 | L139Q (CTG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,421 | 0 | G→A | 100.0% | ‑0.5 | 1 | L139L (CTG→CTA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,422 | 0 | T→A | 100.0% | ‑0.5 | 1 | W140R (TGG→AGG) | rhsC | rhsC element core protein RshC |