New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 35127595 (0.020)217 (0.950) 115/178 NT 97.8% coding (535/1026 nt) cytR DNA‑binding transcriptional dual regulator
?NC_007779 = 3744262 NA (NA)intergenic (‑90/+31) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator

Only 100 of 625 total aligned reads displayed.

TCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCG  >  NC_007779/3512659‑3512859
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gcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAattatt                                                                                                      <  1:1381548‑M2/7‑1 (MQ=255)
 cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAAttattt                                                                                                     <  1:3608178‑M2/8‑1 (MQ=255)
    ccgccgATGGTGATGGCGAACGAATTTGCATCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagac                                                                                                  >  1:3012878‑M1/1‑97 (MQ=255)
    ccgccgATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagac                                                                                                  <  1:7756660‑M1/101‑5 (MQ=255)
     gggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTatat                                                                                                 >  1:2930812‑M2/90‑101 (MQ=255)
       gttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATANGa                                                                                               <  1:1104559‑M2/14‑1 (MQ=255)
        ttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAg                                                                                              <  1:2262561‑M2/15‑1 (MQ=255)
        cgATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggc                                                                                              >  1:5166394‑M1/1‑93 (MQ=255)
         gATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggcc                                                                                             >  1:873205‑M1/1‑92 (MQ=255)
         gATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggcc                                                                                             <  1:7629057‑M1/101‑10 (MQ=255)
          atcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCa                                                                                            <  1:8002854‑M2/17‑1 (MQ=255)
            cgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAg                                                                                          <  1:2178189‑M2/19‑1 (MQ=255)
             gTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTTCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccct                                                                                         <  1:2554876‑M1/101‑14 (MQ=255)
             gTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccct                                                                                         >  1:2070826‑M1/1‑88 (MQ=255)
              ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAggg                                                                                        >  1:7845832‑M2/81‑101 (MQ=255)
               gATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctga                                                                                       >  1:4996657‑M1/1‑86 (MQ=255)
                cgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCa                                                                                      <  1:7278634‑M2/23‑1 (MQ=255)
                cgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCa                                                                                      >  1:100237‑M2/79‑101 (MQ=255)
                aTGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaa                                                                                      >  1:1041151‑M1/1‑85 (MQ=255)
                  ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATa                                                                                    <  1:9659782‑M2/25‑1 (MQ=255)
                      gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACg                                                                                <  1:442279‑M2/29‑1 (MQ=255)
                        gaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGa                                                                              <  1:4444600‑M2/31‑1 (MQ=255)
                          atatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGAtt                                                                            >  1:10716439‑M2/69‑101 (MQ=255)
                          aaTTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagaca                                                                            <  1:8798070‑M1/101‑27 (MQ=255)
                           aTTTGCACCGGAGCTGGAGCCGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaa                                                                           <  1:2633068‑M1/101‑28 (MQ=255)
                            tttGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaac                                                                          <  1:6239396‑M1/101‑29 (MQ=255)
                              tGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaacca                                                                        <  1:6502017‑M1/101‑31 (MQ=255)
                               tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTg                                                                       <  1:11315475‑M2/38‑1 (MQ=255)
                                 cggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGta                                                                     <  1:195887‑M2/40‑1 (MQ=255)
                                  ggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGtat                                                                    <  1:10122415‑M2/41‑1 (MQ=255)
                                     gagctggagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcac                                                                 >  1:6091386‑M1/1‑64 (MQ=255)
                                      gcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGcc                                                                <  1:4922529‑M2/45‑1 (MQ=255)
                                       gctggagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcactt                                                               >  1:1909601‑M1/1‑62 (MQ=255)
                                        ctggagctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcactta                                                              <  1:1217474‑M1/101‑41 (MQ=255)
                                         ggcttgtaaggggtgaagtgataacagatgtctggaaagataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGt                                                             <  1:8582074‑M2/48‑1 (MQ=255)
                                           cttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTcc                                                           <  1:9267042‑M2/50‑1 (MQ=255)
                                            ttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTccc                                                          >  1:1700974‑M2/51‑101 (MQ=255)
                                             tgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCg                                                         >  1:4836326‑M2/50‑101 (MQ=255)
                                              gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGa                                                        <  1:6931764‑M2/53‑1 (MQ=255)
                                              ctgCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataag                                                        >  1:2845116‑M1/1‑55 (MQ=255)
                                               taatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGaa                                                       >  1:808991‑M2/48‑101 (MQ=255)
                                                gCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtg                                                      >  1:1427389‑M1/1‑53 (MQ=255)
                                                aatgggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAag                                                      >  1:10627909‑M2/47‑101 (MQ=255)
                                                   tACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgata                                                   >  1:7030458‑M1/1‑50 (MQ=255)
                                                   gggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAgaga                                                   <  1:2688299‑M2/58‑1 (MQ=255)
                                                    ggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGAt                                                  <  1:10324019‑M2/59‑1 (MQ=255)
                                                    ggttaagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGAt                                                  <  1:71675‑M2/59‑1 (MQ=255)
                                                    aCAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatag                                                  <  1:10913059‑M1/101‑53 (MQ=255)
                                                       taagtgataacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATgct                                               >  1:11633126‑M2/40‑100 (MQ=255)
                                                        ttCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccgcctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                              >  1:11398043‑M1/1‑45 (MQ=255)
                                                        ttCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                              <  1:3802405‑M1/101‑57 (MQ=255)
                                                        ttCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                              <  1:4486850‑M1/101‑57 (MQ=255)
                                                          cATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaa                                            >  1:3982900‑M1/1‑43 (MQ=255)
                                                            tatCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata                                          >  1:11458154‑M1/1‑41 (MQ=255)
                                                              taacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTgtgt                                        >  1:5602145‑M2/33‑101 (MQ=255)
                                                              taacagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTgtgt                                        >  1:9501558‑M2/33‑101 (MQ=255)
                                                              tCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact                                        <  1:1581877‑M1/101‑63 (MQ=255)
                                                                gACAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactag                                      <  1:2463349‑M1/101‑65 (MQ=255)
                                                                 cagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCAc                                     >  1:4723415‑M2/30‑101 (MQ=255)
                                                                 cagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCAc                                     <  1:6885845‑M2/72‑1 (MQ=255)
                                                                 cagatgtctggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCAc                                     >  1:6750326‑M2/30‑101 (MQ=255)
                                                                 aCAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagt                                     <  1:6588200‑M1/101‑66 (MQ=255)
                                                                 aCAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagt                                     <  1:3521114‑M1/101‑66 (MQ=255)
                                                                  cAATCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtt                                    <  1:8920440‑M1/101‑67 (MQ=255)
                                                                    aTCTGACCGCCGCATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                  <  1:10465927‑M1/101‑69 (MQ=255)
                                                                       tttggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGc                               <  1:4312670‑M2/78‑1 (MQ=255)
                                                                       tctggaaatataggggcaaatccAATTATTAATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGc                               >  1:11211664‑M2/24‑101 (MQ=255)
                                                                         tggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCt                             <  1:4598273‑M2/80‑1 (MQ=255)
                                                                         tggaaatataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGACATCCCGCTGTGTCACTACCGCCt                             >  1:3920804‑M2/22‑101 (MQ=255)
                                                                              cgcATTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtc                        <  1:8427414‑M1/101‑79 (MQ=255)
                                                                                ataggggcaaatccAATTATTTATATGAGCAATGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGc                      <  1:793765‑M2/87‑1 (MQ=255)
                                                                                ataggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGc                      <  1:3138129‑M2/87‑1 (MQ=255)
                                                                                 taggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCt                     >  1:9405980‑M2/14‑101 (MQ=255)
                                                                                 ctttgATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt                     <  1:4134266‑M1/100‑82 (MQ=255)
                                                                                 aTTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt                     >  1:3339970‑M1/1‑20 (MQ=255)
                                                                                 aTTTGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt                     <  1:7392096‑M1/101‑82 (MQ=255)
                                                                                  aggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTa                    >  1:10784196‑M2/13‑101 (MQ=255)
                                                                                  aggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTa                    >  1:8621473‑M2/13‑101 (MQ=255)
                                                                                   ttGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgg                   <  1:5229645‑M1/101‑84 (MQ=255)
                                                                                   ggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTAt                   <  1:10503637‑M2/90‑1 (MQ=255)
                                                                                   ggggcaaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTAt                   <  1:6034176‑M2/90‑1 (MQ=255)
                                                                                    tGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga                  <  1:6650801‑M1/101‑85 (MQ=255)
                                                                                    tGATGCAGTAAATTATTagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga                  >  1:2025420‑M1/1‑17 (MQ=255)
                                                                                       caaatccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTc               >  1:5335531‑M2/8‑101 (MQ=255)
                                                                                          atccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAgg            <  1:3442105‑M2/97‑1 (MQ=255)
                                                                                          atccAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAgg            >  1:8256362‑M2/5‑101 (MQ=255)
                                                                                             cagtgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatg         >  1:5921343‑M1/8‑8 (MQ=255)
                                                                                             cagtgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatg         >  1:911063‑M1/8‑8 (MQ=255)
                                                                                              aaatatttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCt        >  1:9002336/4‑101 (MQ=255)
                                                                                              AATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCt        <  1:5843746‑M2/101‑1 (MQ=255)
                                                                                                ttatttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGc      <  1:5659338/101‑1 (MQ=255)
                                                                                                tgaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt      <  1:5419914‑M1/97‑97 (MQ=255)
                                                                                                 tatttatATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCg     <  1:1806828/101‑1 (MQ=255)
                                                                                                 gaatagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattg     <  1:1098617‑M1/98‑98 (MQ=255)
                                                                                                   atagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgat   <  1:5781733‑M1/100‑100 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:11727972‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:10209572‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:7463468‑M1/101‑101 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  >  1:11129423‑M1/1‑1 (MQ=255)
                                                                                                    tagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg  <  1:983850‑M1/101‑101 (MQ=255)
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TCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAGCTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGATTGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCG  >  NC_007779/3512659‑3512859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.