mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,371,749 | 1 | .→T | 2.9% | 32.0 ‑0.7 ‑0.3 | 280 | intergenic (+32/‑181) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase/glucosyltransferase |
| * | NC_007779 | 34,111 | 1 | .→T | 2.2% | 22.3 ‑0.9 ‑0.4 | 274 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 3,152,854 | 1 | .→A | 1.2% | 7.3 0.0 ‑1.2 | 255 | coding (636/660 nt) | yghB | inner membrane protein |
| * | NC_007779 | 4,224,824 | 1 | .→T | 1.1% | 7.2 ‑0.5 ‑0.1 | 285 | coding (1254/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| * | NC_007779 | 2,287,403 | 1 | .→A | 1.1% | 6.4 ‑0.5 ‑0.0 | 277 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 522,430 | 1 | .→T | 1.1% | 5.7 ‑2.4 ‑0.0 | 264 | intergenic (+376/‑55) | ybbP/rhsD | inner membrane protein/rhsD element protein |
| * | NC_007779 | 3,873,374 | 1 | .→T | 1.1% | 5.4 0.0 ‑0.0 | 280 | coding (705/843 nt) | yibA | lyase containing HEAT‑repeat |
| * | NC_007779 | 3,059,420 | 1 | .→T | 0.8% | 3.0 0.0 ‑0.7 | 261 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 4,312,373 | 1 | .→T | 0.8% | 2.7 ‑0.7 ‑0.1 | 252 | coding (105/1029 nt) | alsK | D‑allose kinase |
| * | NC_007779 | 4,510,865 | 1 | .→A | 0.8% | 2.7 0.0 ‑0.1 | 260 | coding (899/1119 nt) | yjhC | oxidoreductase |
| * | NC_007779 | 606,687 | 1 | .→T | 0.8% | 2.6 ‑1.6 ‑0.2 | 257 | intergenic (‑81/‑372) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide |
| * | NC_007779 | 706,385 | 1 | .→T | 0.8% | 2.6 0.0 ‑0.1 | 258 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 3,293,230 | 1 | .→A | 0.8% | 2.6 0.0 ‑0.1 | 256 | intergenic (‑40/‑25) | yraL/yraM | methyltransferase/hypothetical protein |
| * | NC_007779 | 3,789,662 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.5 | 273 | intergenic (+49/‑27) | ilvN/uhpA | acetolactate synthase I, small subunit/DNA‑binding response regulator in two‑component regulatory system wtih UhpB |
| * | NC_007779 | 4,396,933 | 1 | .→A | 0.6% | 2.6 ‑0.7 ‑0.1 | 311 | intergenic (+104/‑107) | orn/glyV | oligoribonuclease/tRNA‑Gly |
| * | NC_007779 | 4,601,746 | 1 | .→T | 0.7% | 2.6 ‑1.4 ‑0.3 | 279 | intergenic (+54/+84) | yjjN/mdoB | oxidoreductase/phosphoglycerol transferase I |
| * | NC_007779 | 4,361,112 | 1 | .→G | 0.8% | 2.5 ‑1.5 ‑0.0 | 258 | intergenic (‑23/+36) | yjdL/cadA | transporter/lysine decarboxylase 1 |
| * | NC_007779 | 179,256 | 1 | .→A | 0.7% | 2.2 ‑0.7 ‑0.0 | 275 | coding (20/1518 nt) | dgt | deoxyguanosine triphosphate triphosphohydrolase |
| * | NC_007779 | 4,512,605 | 0 | T→C | 100.0% | 1.3 | 1 | L231L (CTA→CTG) | insI | IS30 transposase |
| * | NC_007779 | 2,850,251 | 1 | .→G | 0.8% | 1.1 ‑0.7 ‑0.0 | 249 | coding (595/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
| * | NC_007779 | 3,377,617 | 1 | .→C | 0.7% | 0.7 ‑0.7 ‑0.0 | 274 | intergenic (‑342/+53) | sspA/rpsI | stringent starvation protein A/30S ribosomal protein S9 |
| * | NC_007779 | 4,212,642 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (989/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,643 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (990/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,644 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (991/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,645 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (992/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,646 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (993/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,648 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (995/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,650 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (997/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,651 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (998/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,652 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (999/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,654 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1001/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,655 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1002/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,656 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1003/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,659 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1006/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,660 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1007/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,661 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1008/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,662 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1009/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,663 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (1010/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,664 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (1011/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,666 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1013/1542 nt) | rrsE | 16S ribosomal RNA |
| * | NC_007779 | 4,212,668 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (1015/1542 nt) | rrsE | 16S ribosomal RNA |