BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1672780	0 (0.000)	206 (0.870)	115/180	NT	100%	intergenic (+114/‑310)	ynfM/asr	transporter/acid shock‑inducible periplasmic protein
*	?	NC_007779	1980209 =	NA (NA)	206 (0.870)	115/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 163 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/1980109‑1980303

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                <  1:2626167/101‑1 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                <  1:8843481/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                               <  1:1168967/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                               >  1:2923082/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                               <  1:9700430/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                               >  1:4612477/1‑101 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagga                                                                                              <  1:9630788/101‑1 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagga                                                                                              <  1:2970935/101‑1 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                             >  1:7001177/1‑101 (MQ=255)

   cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaa                                                                                             <  1:6768279/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaag                                                                                            >  1:10459311/1‑101 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                           <  1:4033599/101‑1 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                           >  1:255539/1‑101 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                          <  1:9729818/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                          >  1:10546368/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                         <  1:3903170/101‑1 (MQ=255)

        cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGc                                                                                        <  1:6063888/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                       <  1:6861087/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                       <  1:6444118/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                       <  1:1339986/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                      <  1:3294643/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                    <  1:2916387/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                   <  1:6566198/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                   <  1:5146054/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                 >  1:5755648/1‑101 (MQ=255)

                gTCACTCCACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                <  1:7043414/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                >  1:4640150/1‑101 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCg                                                                               >  1:2026984/1‑101 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgg                                                                              >  1:3733972/1‑101 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                             <  1:9782942/101‑1 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAGTGAAGGAAGGTGCGAATAAGCgggg                                                                            <  1:4680014/101‑1 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgggg                                                                            >  1:6194197/1‑101 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgggg                                                                            >  1:10895485/1‑101 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgggg                                                                            >  1:8532390/1‑101 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaa                                                                          <  1:8663237/101‑1 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaa                                                                          <  1:7800871/101‑1 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                         >  1:10003905/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                       >  1:10742293/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                      >  1:11406769/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                      >  1:7717026/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                      >  1:1739585/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                   <  1:10177189/101‑1 (MQ=255)

                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                  <  1:10408809/101‑1 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                >  1:1170034/1‑101 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                >  1:5833684/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                            <  1:9811000/101‑1 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                            <  1:7460463/101‑1 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                           >  1:4795428/1‑101 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                          <  1:9228481/101‑1 (MQ=255)

                                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                        >  1:361151/1‑101 (MQ=255)

                                         gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                       >  1:712674/1‑101 (MQ=255)

                                          ggcgcttagATTTCAAATAATACGTCATGAAGAGAACACAAACAACAAAATTACTTAAGGAGGGTGAAAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                      <  1:11201800/93‑1 (MQ=9)

                                           gagCTGCGATTTTCAATAATGCGTGATGCAGAGCAAACAAACCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                     <  1:1955914/99‑1 (MQ=255)

                                            ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                    >  1:7014171/1‑101 (MQ=255)

                                             gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                   >  1:11400802/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                               >  1:3653643/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                               >  1:7956163/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                               >  1:1261818/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                              >  1:5353846/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                              >  1:9475181/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                              >  1:3523031/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                             >  1:272018/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAATCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                            >  1:8333920/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                            >  1:8282476/1‑101 (MQ=255)

                                                       tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                         >  1:8820550/1‑101 (MQ=255)

                                                        cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                        >  1:1698942/1‑101 (MQ=255)

                                                         aataatGCTTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                       <  1:11061538/101‑1 (MQ=255)

                                                         aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                       <  1:6247783/101‑1 (MQ=255)

                                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                      >  1:7985606/1‑101 (MQ=255)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                     >  1:2167556/1‑101 (MQ=255)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                     >  1:5729118/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                    >  1:4340892/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                   >  1:11443378/1‑101 (MQ=255)

                                                              tGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                  >  1:8536736/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                 >  1:11205969/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                >  1:10624354/1‑101 (MQ=255)

                                                                cGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                >  1:5417448/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                              >  1:235849/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                              <  1:1242229/101‑1 (MQ=255)

                                                                   gATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                             >  1:1833850/1‑101 (MQ=255)

                                                                    aTGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                            >  1:10616477/1‑101 (MQ=255)

                                                                    aTGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                            >  1:5995273/1‑101 (MQ=255)

                                                                      gCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                          >  1:6172866/1‑101 (MQ=255)

                                                                      gCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                          >  1:4118175/1‑101 (MQ=255)

                                                                        aGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                        >  1:5355886/1‑101 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                       >  1:4937988/1‑101 (MQ=255)

                                                                            cacacaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                    >  1:2347937/1‑101 (MQ=255)

                                                                                 aaaaCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc               >  1:7916879/1‑101 (MQ=255)

                                                                                 aaaaCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc               >  1:3447949/1‑101 (MQ=255)

                                                                                   aaCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt             >  1:9777891/1‑101 (MQ=255)

                                                                                     cacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa           >  1:5214607/1‑101 (MQ=40)

                                                                                     cacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa           >  1:5016631/1‑101 (MQ=40)

                                                                                      acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa          >  1:330014/1‑101 (MQ=40)

                                                                                           aTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt     >  1:5252520/1‑101 (MQ=34)

                                                                                           aTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt     >  1:5780824/1‑101 (MQ=34)

                                                                                           aTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt     >  1:7328803/1‑101 (MQ=34)

                                                                                            ttACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt    >  1:8859201/1‑101 (MQ=33)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg   >  1:8478626/1‑101 (MQ=32)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg   >  1:4191725/1‑101 (MQ=32)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa  >  1:11285353/1‑101 (MQ=31)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/1980109‑1980303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.