New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	49661 =	231 (0.990)	9 (0.040)	8/180	NT	3.8%	intergenic (+30/‑162)	kefC/folA	potassium:proton antiporter/dihydrofolate reductase
	?	NC_007779	273179 =	NA (NA)					coding (1109/1146 nt)	ykfC	hypothetical protein

ATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/49752‑49661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/273179‑273273                                                                                                                                                                                             ATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGC                                                                                        <  1:11255952/101‑1                ATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGGGCGAATAAGCGGGGAAA                                                                         >  1:11862233/1‑101                             CTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG                                                            <  1:10424015/101‑1                                  GAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                                                       >  1:4482294/1‑101                                     TCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC                                                    >  1:9346824/1‑101                                                         TCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAATGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGATTG                                >  1:8120073/1‑101                                                                        GAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTC                 >  1:2004098/1‑101                                                                                    AACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCT     >  1:4077547/1‑101                                                                                       AGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  1:1428803/1‑101                                                                                                                                                                                             ATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/49752‑49661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/273179‑273273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.