New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 274373	NA (NA)	31 (0.130)	26/180	NT	9.8%	intergenic (‑32/‑176)	insH/mmuP	IS5 transposase and trans‑activator/S‑methylmethionine transporter
	?	NC_007779	675375 =	284 (1.210)					intergenic (‑170/‑65)	leuS/ybeL	leucyl‑tRNA synthetase/hypothetical protein

TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/274295‑274373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGCTCAATATTACCGTGAA  >  NC_007779/675375‑675469                                                                                                                                                                                TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGA                                                                           >  1:2832239/1‑101  GATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAA                                                                          <  1:10541666/101‑1   ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCTTAGCAAAGCAAGGAACAAAGAAC                                                                         <  1:2218305/101‑1   ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAAC                                                                         <  1:11840855/101‑1    TGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACG                                                                        <  1:5258969/101‑1     GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGT                                                                       >  1:2346394/1‑101       CTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCT                                                                     <  1:49068/101‑1        TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTA                                                                    >  1:6151065/1‑101        TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTA                                                                    >  1:5807095/1‑101              TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTA                                                              <  1:8958914/101‑1               GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTAT                                                             <  1:5471062/101‑1                     TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAG                                                       >  1:1318446/1‑101                                TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCG                                            >  1:3555684/1‑101                                 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGG                                           >  1:5860189/1‑101                                   AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGA                                         <  1:4702827/101‑1                                    GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAG                                        <  1:7085762/101‑1                                    GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGGCAGTTAACGACCCGGGAG                                        <  1:9785115/101‑1                                      TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGAT                                      <  1:2778748/101‑1                                      TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGAT                                      <  1:10356045/101‑1                                          AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAA                                  <  1:6813901/101‑1                                              ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGAT                              <  1:3349081/101‑1                                                    TCATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAA                        >  1:4574217/1‑101                                                     CATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAG                       <  1:6442227/101‑1                                                      ATATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGG                      >  1:9916421/1‑101                                                       TATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGT                     >  1:9139586/1‑101                                                        ATCAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTT                    <  1:5328460/101‑1                                                          CAGGGACTTGTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGC                  >  1:10817574/1‑101                                                                   GTTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGCTCAATATTA         >  1:861289/1‑101                                                                    TTCGCACCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGCTCAATATTAC        >  1:6569728/1‑101                                                                    TTCGCACCTTCCTTAGCAAAGAAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGCTCAATATTAC        >  1:7005564/1‑101                                                                          CCTTCCTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGATCAAGGTTGCTCAATATTACCGTGAA  <  1:10467372/101‑1                                                                                                                                                                                TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/274295‑274373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACGATGAACAAGGTTGCTCAATATTACCGTGAA  >  NC_007779/675375‑675469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.