BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980091 =	0 (0.000)	154 (0.660)	89/180	NT	100%	intergenic (‑171/+264)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980209 =	NA (NA)	154 (0.660)	89/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 172 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                   >  1:9769814/1‑101 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                   <  1:5543233/101‑1 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                   >  1:3870106/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                  >  1:10958808/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaag                                                                                               <  1:731782/101‑1 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                              <  1:3725361/101‑1 (MQ=255)

     cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaagg                                                                                              <  1:8559290/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                             <  1:10667276/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                             <  1:9277674/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                             <  1:4093832/101‑1 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                            <  1:6552319/101‑1 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                            <  1:5936740/101‑1 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                            >  1:7044415/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                            >  1:1565424/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCAATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                            >  1:6868473/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                          >  1:2371894/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                          >  1:5006142/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                          >  1:5206464/1‑101 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCg                                                                                          >  1:5313686/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                         <  1:3802263/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                         >  1:6809543/1‑101 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATCATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                        >  1:4369478/1‑101 (MQ=255)

           aaCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                        <  1:8042583/100‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                       <  1:3581490/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGGAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                      >  1:11771000/1‑101 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                      <  1:1590372/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                      <  1:7493915/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                     <  1:4545437/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                     <  1:9869158/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                     <  1:9384513/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                     <  1:11253749/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑g                                                                                  <  1:661518/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑Gc                                                                                 <  1:5397603/101‑1 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCg                                                                                <  1:3998279/101‑1 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCgg                                                                               >  1:709169/1‑101 (MQ=255)

                    tttcacGCACATACAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGTTGCAGATCACACAAAACACTCAATTGCTTAAGGAAGGTGCGAATAA‑‑GCgggg                                                                             <  1:11635629/98‑1 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGa                                                                            <  1:9429569/101‑1 (MQ=255)

                      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGaa                                                                           >  1:10904780/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAAta                                                                        <  1:1324003/101‑2 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTCCGAATAA‑‑GCGGGGAAAttc                                                                       <  1:7623780/101‑1 (MQ=255)

                           cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAAttct                                                                      <  1:10125718/101‑1 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAAttcttc                                                                    >  1:9662859/1‑101 (MQ=255)

                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATtcttct                                                                   <  1:1936324/101‑1 (MQ=255)

                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATtcttct                                                                   <  1:1346779/101‑1 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCg                                                                 >  1:2398983/1‑101 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCg                                                                 <  1:9338946/101‑1 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCgg                                                                <  1:10441509/101‑1 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCgg                                                                >  1:7488115/1‑101 (MQ=255)

                                  aaggggggggggCTGCGATTTTAAATAATGCGTGATGCAAATCACACAAAACCCTCAATTCCTTAAGGAAGGTGCAAATAA‑‑GCGGGGAAATTCTTCTCGGc                                                               <  1:8802862/95‑1 (MQ=25)

                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGc                                                               >  1:11672967/1‑101 (MQ=255)

                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGc                                                               >  1:1071368/1‑101 (MQ=255)

                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGc                                                               >  1:9819135/1‑101 (MQ=255)

                                   agggAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACAAAAAACCCTAAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCt                                                              <  1:7895054/99‑1 (MQ=37)

                                   aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCt                                                              >  1:6088909/1‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGa                                                            <  1:3622689/101‑1 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGAc                                                           >  1:7202300/1‑101 (MQ=255)

                                       gggggggGTG‑GATTTTCAAAAATGGGTGATACAGATCACACAAAACACTCAATTACTTAAGGGAAGGGCGAAAAAGGGGGGGGAAATTCTTCTCGGCTGAc                                                           <  1:8470142/100‑1 (MQ=255)

                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACt                                                          >  1:8316177/1‑101 (MQ=255)

                                         gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCa                                                        >  1:5542389/1‑101 (MQ=255)

                                         gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCa                                                        >  1:8116263/1‑101 (MQ=255)

                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAg                                                       >  1:11110994/1‑101 (MQ=255)

                                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAg                                                       >  1:5941651/1‑101 (MQ=255)

                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATGCTTCTCGGCTGACTCAGt                                                      >  1:8087218/1‑101 (MQ=255)

                                            ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     >  1:5345047/1‑101 (MQ=255)

                                             gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                    >  1:10917693/1‑101 (MQ=255)

                                                gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                 >  1:10148917/1‑101 (MQ=255)

                                                 cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc                                                >  1:5727442/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:9731640/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:4131978/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:4857195/1‑101 (MQ=255)

                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:6395056/1‑101 (MQ=255)

                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:9781468/1‑101 (MQ=255)

                                                        cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                         <  1:11835321/101‑1 (MQ=255)

                                                         aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                        >  1:6177870/1‑101 (MQ=255)

                                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       >  1:10111108/1‑101 (MQ=255)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                      >  1:9555041/1‑101 (MQ=255)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                      >  1:10859945/1‑101 (MQ=255)

                                                           taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                      >  1:8819920/1‑101 (MQ=255)

                                                                   gATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                              >  1:2797238/1‑101 (MQ=255)

                                                                     tGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                            >  1:10551546/1‑101 (MQ=255)

                                                                        aGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                         >  1:5477986/1‑101 (MQ=255)

                                                                        aGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                         >  1:4736235/1‑101 (MQ=255)

                                                                           tCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                      >  1:10417406/1‑101 (MQ=255)

                                                                             acacaAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                    >  1:7365319/1‑101 (MQ=255)

                                                                              cacaAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   >  1:169714/1‑101 (MQ=255)

                                                                              caaaaaaCACAAAATTACTAAGGGAAGGTGCAAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   <  1:890419/98‑1 (MQ=11)

                                                                               acaAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTAATGTTTGAGCCGATTTTTtctc                  >  1:7834244/1‑101 (MQ=255)

                                                                                 aaaaCACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCCTTTCCTTTCTTCATGGTTTAGCCGATTTTTTCTccc                >  1:4971989/1‑101 (MQ=14)

                                                                                 aaaaCACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                >  1:7720885/1‑101 (MQ=255)

                                                                                  aaaCACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg               >  1:8837903/1‑101 (MQ=255)

                                                                                     cacTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa            >  1:579823/1‑101 (MQ=40)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:115277/1‑101 (MQ=37)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:969176/1‑101 (MQ=37)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:4018674/1‑101 (MQ=37)

                                                                                           aTTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:4503784/1‑101 (MQ=34)

                                                                                           aTTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:8552156/1‑101 (MQ=34)

                                                                                             tACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:10773211/1‑101 (MQ=32)

                                                                                             tACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:2736999/1‑101 (MQ=32)

                                                                                              aCTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   <  1:10979599/101‑1 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:1780050/1‑101 (MQ=31)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAA‑‑GCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.