BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	2411458 =	NA (NA)	282 (1.000)	141/180	NT	95.9%	intergenic (‑147/+15)	lrhA/insB	DNA‑binding transcriptional repressor/IS1 element protein
*	?	NC_007779	= 2985055	12 (0.040)	282 (1.000)	141/180	NT	95.9%	coding (553/1230 nt)	yqeG	transporter

Only 100 of 329 total aligned reads displayed.

CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411358‑2411556

cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                    >  1:5555784/1‑101 (MQ=255)

 acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCgg                                                                                                   <  1:794729/101‑1 (MQ=255)

   acacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTa                                                                                                 <  1:4968779/101‑1 (MQ=255)

     acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAAt                                                                                               <  1:9527837/101‑1 (MQ=255)

     acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAAt                                                                                               >  1:6296233/1‑101 (MQ=255)

     acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAAt                                                                                               <  1:12175/101‑1 (MQ=255)

      caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATg                                                                                              <  1:2098965/101‑1 (MQ=255)

       aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGa                                                                                             >  1:9081532/1‑101 (MQ=255)

       aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGa                                                                                             >  1:8687855/1‑101 (MQ=255)

       aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGa                                                                                             <  1:7738011/101‑1 (MQ=255)

           aaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTcc                                                                                         <  1:13039629/101‑1 (MQ=255)

           aaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTcc                                                                                         <  1:4866259/101‑1 (MQ=255)

               aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACt                                                                                     >  1:2530648/1‑101 (MQ=255)

               aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACt                                                                                     <  1:12569916/101‑1 (MQ=255)

                 ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTa                                                                                   <  1:1446153/101‑1 (MQ=255)

                 ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTa                                                                                   <  1:10392908/101‑1 (MQ=255)

                  tCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTAt                                                                                  >  1:5828933/1‑101 (MQ=255)

                   ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTAtt                                                                                 <  1:4731605/101‑1 (MQ=255)

                   ccATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTAtt                                                                                 <  1:1621382/101‑1 (MQ=255)

                    cATTTGTACTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTg                                                                                <  1:6136166/101‑1 (MQ=255)

                    cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTg                                                                                <  1:7462145/101‑1 (MQ=255)

                     aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGa                                                                               >  1:3166503/1‑101 (MQ=255)

                      tttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGAt                                                                              >  1:7232354/1‑101 (MQ=255)

                       ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATa                                                                             >  1:632368/1‑101 (MQ=255)

                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGATTCCAACTTATTGATAg                                                                            <  1:9787481/101‑1 (MQ=255)

                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                            >  1:6251849/1‑101 (MQ=255)

                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                            >  1:4151487/1‑101 (MQ=255)

                        tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAg                                                                            <  1:12833040/101‑1 (MQ=255)

                          tAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtg                                                                          <  1:12248323/101‑1 (MQ=255)

                           aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAgtat                                                                         <  1:4628697/101‑3 (MQ=255)

                             tgtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGttt                                                                       <  1:9679842/101‑1 (MQ=255)

                               tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAATGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                     >  1:9465750/1‑101 (MQ=255)

                               tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                     >  1:11020409/1‑101 (MQ=255)

                               tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                     <  1:2842025/101‑1 (MQ=255)

                               tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTa                                                                     >  1:10302675/1‑101 (MQ=255)

                                gCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTAAAAATGCATATGAGTTGAACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                    >  1:5596311/1‑101 (MQ=255)

                                 ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   <  1:10828513/101‑1 (MQ=255)

                                 ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                                   <  1:8025774/101‑1 (MQ=255)

                                  cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt                                                                  <  1:14146624/101‑1 (MQ=255)

                                   tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                 >  1:2406900/1‑101 (MQ=255)

                                   tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                                                                 <  1:275810/101‑1 (MQ=255)

                                    cccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                                >  1:4463455/1‑101 (MQ=255)

                                      cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAg                                                              <  1:10886263/101‑1 (MQ=255)

                                       tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                             <  1:5908298/101‑1 (MQ=255)

                                       tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa                                                             >  1:12032856/1‑101 (MQ=255)

                                        tgCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            >  1:12426697/2‑101 (MQ=255)

                                        ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            <  1:759049/101‑1 (MQ=255)

                                        ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                            >  1:5184565/1‑101 (MQ=255)

                                            gTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                                                        <  1:8393710/101‑1 (MQ=255)

                                             tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                                       >  1:11968014/1‑101 (MQ=255)

                                              ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc                                                      >  1:10459698/1‑101 (MQ=255)

                                               tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                     <  1:2314911/101‑1 (MQ=255)

                                                 aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGa                                                   >  1:11384512/1‑101 (MQ=255)

                                                  tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                  <  1:3803600/101‑1 (MQ=255)

                                                  tCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAt                                                  <  1:1754644/101‑1 (MQ=255)

                                                   ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                 <  1:11873991/101‑1 (MQ=255)

                                                    cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                                >  1:8801889/1‑101 (MQ=255)

                                                    cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGa                                                <  1:10025310/101‑1 (MQ=255)

                                                     ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                               <  1:8548316/101‑1 (MQ=255)

                                                     ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                               <  1:7356830/101‑1 (MQ=255)

                                                       aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                             <  1:13279590/101‑1 (MQ=255)

                                                       aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                             <  1:7060819/101‑1 (MQ=255)

                                                       aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtt                                             <  1:6618088/101‑1 (MQ=255)

                                                         cccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                                           <  1:4320596/101‑1 (MQ=255)

                                                         cccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                                           >  1:2575162/1‑101 (MQ=255)

                                                          ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                          <  1:8940224/101‑1 (MQ=255)

                                                           cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                                         >  1:4373304/1‑101 (MQ=255)

                                                            ggACGAAAGTAAAAATGCATATGAGTTGCGCTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                        <  1:12328416/101‑1 (MQ=255)

                                                            ggACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                        <  1:4227693/101‑1 (MQ=255)

                                                            ggACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                        >  1:38817/1‑101 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     >  1:2206453/1‑101 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     <  1:14085674/101‑1 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     >  1:6823427/1‑101 (MQ=255)

                                                               cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                     >  1:6973285/1‑101 (MQ=255)

                                                                gAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    >  1:4578565/1‑101 (MQ=255)

                                                                gAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    >  1:11319862/1‑101 (MQ=255)

                                                                gAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCa                                    <  1:6710783/101‑1 (MQ=255)

                                                                    gTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                                >  1:9325027/1‑101 (MQ=255)

                                                                     tAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTcc                               >  1:13838501/1‑101 (MQ=255)

                                                                           tGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                         >  1:3966833/1‑101 (MQ=255)

                                                                           tGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                         >  1:6487352/1‑101 (MQ=255)

                                                                                atGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTga                    >  1:9638598/1‑101 (MQ=255)

                                                                                 tGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgag                   >  1:1315851/1‑101 (MQ=255)

                                                                                  gAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga                  >  1:1361663/1‑101 (MQ=255)

                                                                                  gAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga                  >  1:13436218/1‑101 (MQ=255)

                                                                                   aGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                 >  1:57898/1‑101 (MQ=255)

                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               <  1:3351883/101‑1 (MQ=255)

                                                                                     ttGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTATGTCATGCAGCTCCACAGTTTTTgagatca               >  1:3659489/1‑98 (MQ=14)

                                                                                      tGCACTAAAAAAGCGGTAATGACTCCAACTTATTGGTAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGTTCCACCGATTTTGAGAACgc              >  1:13541641/1‑100 (MQ=255)

                                                                                       gCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc             <  1:4437627/101‑1 (MQ=255)

                                                                                       gCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc             >  1:9054023/1‑101 (MQ=255)

                                                                                         aCTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           <  1:7146632/101‑1 (MQ=40)

                                                                                          cTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc          <  1:11187277/101‑1 (MQ=39)

                                                                                          cTAAAAAAGCGGTAATGACTCCAACTTATTGAAAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc          <  1:5160439/101‑1 (MQ=255)

                                                                                            aaaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGa        >  1:4064220/1‑101 (MQ=37)

                                                                                            aaaaaaGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGa        >  1:13762259/1‑101 (MQ=37)

                                                                                                 aGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   <  1:3068906/101‑1 (MQ=31)

                                                                                                 aGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   >  1:1946878/1‑101 (MQ=31)

                                                                                                 aGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   <  1:5352747/101‑1 (MQ=31)

                                                                                                  gCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCg  <  1:11755332/101‑1 (MQ=11)

CACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_007779/2411358‑2411556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.