mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 686,495 | 0 | A→C | 13.2% | 50.1 ‑100.7 0.0 | 439 | G199G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 301 | 1 | .→T | 2.2% | 20.4 ‑0.9 ‑0.0 | 277 | intergenic (+46/‑36) | thrL/thrA | thr operon leader peptide/fused aspartokinase I and homoserine dehydrogenase I |
| * | NC_007779 | 706,385 | 1 | .→T | 1.9% | 16.9 0.0 ‑0.1 | 266 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 687,133 | 0 | A→C | 2.9% | 10.3 ‑31.5 0.0 | 554 | intergenic (‑42/+128) | gltJ/gltI | glutamate and aspartate transporter subunit/glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,387,486 | 1 | .→A | 1.1% | 7.0 ‑1.3 ‑0.3 | 264 | coding (104/1212 nt) | elaD | hypothetical protein |
| * | NC_007779 | 4,644,244 | 1 | .→T | 1.1% | 6.2 ‑0.5 ‑0.0 | 266 | intergenic (+34/+26) | creD/arcA | inner membrane protein/DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| * | NC_007779 | 3,576,400 | 1 | .→A | 1.1% | 6.1 ‑1.3 ‑0.0 | 270 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 2,418,805 | 1 | .→A | 0.8% | 3.0 ‑0.7 ‑0.2 | 252 | intergenic (‑227/‑111) | yfbV/ackA | inner membrane protein/acetate kinase A and propionate kinase 2 |
| * | NC_007779 | 2,307,320 | 1 | .→A | 0.8% | 2.9 ‑1.5 ‑0.2 | 255 | coding (82/489 nt) | eco | ecotin |
| * | NC_007779 | 3,256,890 | 1 | .→A | 0.8% | 2.8 ‑1.5 ‑0.1 | 263 | intergenic (‑287/+51) | yhaO/tdcG | transporter/L‑serine dehydratase 3 |
| * | NC_007779 | 3,523,811 | 1 | .→T | 0.8% | 2.7 0.0 ‑0.2 | 261 | intergenic (‑97/+115) | yiiS/yiiR | hypothetical protein/inner membrane protein |
| * | NC_007779 | 149,550 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.2 | 285 | coding (52/795 nt) | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| * | NC_007779 | 2,412,225 | 1 | .→A | 0.8% | 2.6 ‑1.4 ‑0.0 | 262 | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| * | NC_007779 | 3,478,395 | 1 | .→T | 0.7% | 2.6 0.0 ‑0.4 | 268 | intergenic (‑204/+63) | oxyR/argH | DNA‑binding transcriptional dual regulator/argininosuccinate lyase |
| * | NC_007779 | 3,519,465 | 1 | .→A | 0.8% | 2.6 ‑1.4 ‑0.0 | 266 | coding (7/1509 nt) | glpK | glycerol kinase |
| * | NC_007779 | 1,020,666 | 1 | .→A | 0.7% | 2.5 ‑0.7 ‑0.0 | 274 | intergenic (‑191/+166) | ompA/sulA | outer membrane protein A (3a;II*;G;d)/SOS cell division inhibitor |
| * | NC_007779 | 3,193,538 | 1 | .→A | 0.7% | 2.3 ‑1.8 ‑0.0 | 288 | intergenic (+357/+438) | yqiK/rfaE | hypothetical protein/fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| * | NC_007779 | 3,530,293 | 1 | .→A | 0.8% | 1.9 0.0 ‑0.0 | 254 | intergenic (‑81/+68) | fieF/cpxP | zinc transporter/hypothetical protein |
| * | NC_007779 | 685,600 | 0 | T→. | 0.4% | 1.3 0.0 ‑0.7 | 666 | coding (78/726 nt) | gltL | glutamate and aspartate transporter subunit |
| * | NC_007779 | 4,016,769 | 1 | .→C | 0.8% | 0.6 ‑2.0 ‑0.0 | 262 | coding (248/384 nt) | yhhH | hypothetical protein |
| * | NC_007779 | 730,377 | 0 | C→A | 100.0% | ‑0.2 | 1 | H125N (CAC→AAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 4,213,830 | 0 | C→G | 100.0% | ‑0.2 | 1 | noncoding (198/2904 nt) | rrlE | 23S ribosomal RNA |