New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1909352	233 (1.000)	39 (0.170)	34/180	NT	14.3%	intergenic (‑47/+623)	yobF/yebO	hypothetical protein/hypothetical protein
	?	NC_007779	2411458 =	NA (NA)					intergenic (‑147/+15)	lrhA/insB	DNA‑binding transcriptional repressor/IS1 element protein

TCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1909256‑1909352 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAC  >  NC_007779/2411458‑2411545                                                                                                                                                                                           TCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTA                                                                                      >  1:8097190/1‑101  CAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAA                                                                                     <  1:2192299/101‑1   AACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAAT                                                                                    <  1:11412203/101‑1     CGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGA                                                                                  <  1:5201434/101‑1      GTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGAC                                                                                 >  1:7723541/1‑101        CAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTC                                                                               <  1:6237589/101‑1        CAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTC                                                                               <  1:8059030/101‑1           CGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAA                                                                            <  1:2506378/101‑1            GTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAAC                                                                           <  1:2256216/101‑1                 TACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATT                                                                      <  1:4923527/101‑1                 TACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATT                                                                      >  1:5475458/1‑101                  ACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTG                                                                     <  1:509917/101‑1                     CAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATA                                                                  <  1:1749454/101‑1                        GACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTG                                                               >  1:2132978/1‑101                          CTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTT                                                             <  1:10756275/101‑1                           TTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTT                                                            <  1:7401740/101‑1                            TCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTT                                                           <  1:1827985/101‑1                                TACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                                                       >  1:2994360/1‑101                                TACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                                                       <  1:5499750/101‑1                                    GAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG                                                   <  1:1085505/101‑1                                       AATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATA                                                <  1:3315917/101‑1                                        ATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA                                               >  1:2111410/1‑101                                        ATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA                                               >  1:5224591/1‑101                                         TGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                                              >  1:6333994/1‑101                                           CCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC                                            <  1:11709842/101‑1                                               ACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA                                        <  1:10873338/101‑1                                                 ATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGTCCGATG                                      <  1:2562300/101‑1                                                      CAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT                                 >  1:5798655/1‑101                                                      CAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT                                 >  1:2254866/1‑101                                                           CTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT                            <  1:2815195/101‑1                                                            TGTACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG                           >  1:9457571/1‑101                                                              TACCTCGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA                         <  1:10484053/101‑1                                                                   CGTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC                    >  1:1933266/1‑101                                                                    GTTTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCA                   <  1:1134351/101‑1                                                                      TTAACCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACC                 <  1:3438113/101‑1                                                                          CCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATT             >  1:5256760/1‑101                                                                          CCCGAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATT             >  1:2253964/1‑101                                                                             GAAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTG          <  1:1788168/101‑1                                                                              AAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGA         >  1:2659269/1‑101                                                                              AAATCTGTTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGA         >  1:9115553/1‑101                                                                                     TTATCACATACAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAC  <  1:6953661/101‑1                                                                                                                                                                                           TCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1909256‑1909352 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAC  >  NC_007779/2411458‑2411545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.