Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077791,097,7650A→. 0.6% 1.6 ‑2.6 ‑0.1535intergenic (+514/+41)ycdU/serXinner membrane protein/tRNA‑Ser
Rejected: E-value exceeds prediction threshold.
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (3/0):  ref base (224/308):  total (227/308)
Fisher's exact test strand distribution p-value = 7.58e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.78e-01

Only 100 of 621 total aligned reads displayed.

GGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGT  >  NC_007779/1097665‑1097865
                                                                                                     |                                                                                                    
gggCGGCCCGCACCCGGAGTTCACGGTCTGCCCAACTGGCCGCCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      <  1:5043821/101‑1 (MQ=11)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      >  1:5592463/1‑101 (MQ=35)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      >  1:5691432/1‑101 (MQ=35)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      >  1:10535991/1‑101 (MQ=35)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      >  1:8566300/1‑101 (MQ=35)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      <  1:11134828/101‑1 (MQ=35)
gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGa                                                                                                      >  1:6503031/1‑101 (MQ=35)
 ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGaa                                                                                                     <  1:11292724/101‑1 (MQ=25)
  gCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGaaa                                                                                                    >  1:11876659/1‑101 (MQ=35)
    aGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGaaaaa                                                                                                  <  1:7225132/101‑1 (MQ=35)
      cccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGaaaaaaa                                                                                                <  1:8943954/101‑1 (MQ=35)
      cccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGaaaaaaa                                                                                                <  1:580544/101‑1 (MQ=35)
         gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGc                                                                                             <  1:1252167/101‑1 (MQ=37)
          cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGcc                                                                                            >  1:345922/1‑101 (MQ=35)
           tcccTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGccc                                                                                           <  1:2214916/98‑1 (MQ=37)
           tCACTGCGTTCACGGTCTGTCCACCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGccc                                                                                           <  1:5924961/101‑1 (MQ=37)
           tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGccc                                                                                           <  1:8832537/101‑1 (MQ=37)
           tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGccc                                                                                           <  1:4617162/101‑1 (MQ=37)
             aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGt                                                                                         <  1:9828800/101‑1 (MQ=35)
              cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTa                                                                                        <  1:6567848/101‑1 (MQ=37)
              cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTa                                                                                        <  1:5367961/101‑1 (MQ=37)
              cTGCGTTCACGGTCGGTCCAACTGGCTGCCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTa                                                                                        <  1:3876265/101‑1 (MQ=255)
               tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAc                                                                                       <  1:3052719/101‑1 (MQ=37)
                gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGGTTTTTATTCCCCCCGGGGGGGGC‑ATATAAGAAAAAAAAAACCGGACt                                                                                      >  1:8475302/1‑101 (MQ=2)
                gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACt                                                                                      >  1:4908374/1‑101 (MQ=37)
                 ctttCACGGTCGGCCCACCTGGCTGTCGCCGGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACtt                                                                                     <  1:7824654/99‑1 (MQ=11)
                 cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACtt                                                                                     <  1:5517634/101‑1 (MQ=35)
                   ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc                                                                                   >  1:263368/1‑101 (MQ=37)
                   ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc                                                                                   <  1:4719754/101‑1 (MQ=35)
                   ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc                                                                                   <  1:9437749/101‑1 (MQ=37)
                   ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc                                                                                   <  1:7741617/101‑1 (MQ=37)
                    tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCg                                                                                  <  1:9267595/101‑1 (MQ=35)
                    tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCg                                                                                  >  1:8251586/1‑101 (MQ=35)
                      aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTa                                                                                >  1:3552437/1‑101 (MQ=35)
                       cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAc                                                                               <  1:4188694/101‑1 (MQ=35)
                        ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                              <  1:4495560/101‑1 (MQ=37)
                        ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                              <  1:8115156/101‑1 (MQ=35)
                        ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                              <  1:11623761/101‑1 (MQ=35)
                        ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                              >  1:10911060/1‑101 (MQ=37)
                         gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGa                                                                             >  1:682643/1‑101 (MQ=37)
                          tCTGTCCACCTGGCTGTCGCCAGTTGTCAAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                            <  1:11810338/101‑1 (MQ=255)
                          tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                            >  1:666159/1‑101 (MQ=37)
                          tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                            <  1:7483712/101‑1 (MQ=37)
                          tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                            <  1:10434715/101‑1 (MQ=35)
                           cTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGc                                                                           <  1:11495076/101‑1 (MQ=35)
                            tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGct                                                                          >  1:7317092/1‑101 (MQ=37)
                              tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGctct                                                                        >  1:2930596/1‑101 (MQ=37)
                              tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGctct                                                                        <  1:1905272/101‑1 (MQ=35)
                                cAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCTATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttc                                                                      >  1:8701172/1‑101 (MQ=37)
                                   cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt                                                                   >  1:10225395/1‑101 (MQ=35)
                                     ggCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaa                                                                 <  1:8331732/101‑1 (MQ=35)
                                      gCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTGTTCTTTaaa                                                                >  1:11068636/1‑101 (MQ=255)
                                      gCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                <  1:2724077/101‑1 (MQ=35)
                                        tGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                              <  1:369510/101‑1 (MQ=35)
                                          tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                            >  1:4392630/1‑101 (MQ=37)
                                          tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                            >  1:3337707/1‑101 (MQ=37)
                                          tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                            >  1:10826743/1‑101 (MQ=37)
                                             ccAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg                                                         >  1:2003267/1‑101 (MQ=35)
                                             ccAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg                                                         >  1:7569046/1‑101 (MQ=35)
                                              cAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCgg                                                        >  1:2410883/1‑101 (MQ=35)
                                                gTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTg                                                      <  1:6320768/101‑1 (MQ=35)
                                                 ttGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                     >  1:6021606/1‑101 (MQ=35)
                                                  tGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAg                                                    <  1:5194347/101‑1 (MQ=35)
                                                    tCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                  <  1:7645701/101‑1 (MQ=35)
                                                      gAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                >  1:9716185/1‑101 (MQ=35)
                                                      gAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                <  1:2491038/101‑1 (MQ=35)
                                                       aaCCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggggg                                               >  1:3650637/1‑101 (MQ=34)
                                                       aaCCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggggg                                               <  1:4311053/101‑1 (MQ=34)
                                                       aaCCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGAGGTGGgggggg                                               >  1:4005578/1‑101 (MQ=19)
                                                        aCCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggggg                                              <  1:5109996/101‑1 (MQ=33)
                                                          cccGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                            <  1:11680078/101‑1 (MQ=32)
                                                          cccGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                            <  1:3256841/101‑1 (MQ=32)
                                                           ccGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtt                                           >  1:5479000/1‑101 (MQ=32)
                                                           ccGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtt                                           <  1:7930608/101‑1 (MQ=32)
                                                           ccGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAGGGCGGTGAgggggggggt                                           >  1:3785512/1‑98 (MQ=12)
                                                            cGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttg                                          >  1:4085964/1‑100 (MQ=14)
                                                            cGGGCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtta                                          <  1:1540079/101‑2 (MQ=17)
                                                             ggTTGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCg                                         <  1:6192005/101‑1 (MQ=21)
                                                             ggTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCg                                         >  1:6904513/1‑101 (MQ=25)
                                                             ggTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttga                                         <  1:1370855/101‑3 (MQ=11)
                                                             ggTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttga                                         >  1:9601808/1‑99 (MQ=14)
                                                             ggTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGGTTCg                                         >  1:10014185/1‑101 (MQ=19)
                                                             cgTCGGGGGTTCCCC‑TCCCCCCCGTGTGTGGAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttga                                         <  1:11369200/100‑3 (MQ=11)
                                                              gTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttgac                                        >  1:10660676/1‑98 (MQ=11)
                                                              gTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                                        <  1:1610755/101‑1 (MQ=35)
                                                               tCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                       >  1:1434809/1‑101 (MQ=37)
                                                                       tctcA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt                               <  1:10101986/101‑1 (MQ=255)
                                                                       tctcA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt                               <  1:4864834/101‑1 (MQ=255)
                                                                         tcA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc                             <  1:714744/101‑1 (MQ=255)
                                                                             tCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt                          <  1:9139399/101‑1 (MQ=255)
                                                                                ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc                       >  1:256050/1‑101 (MQ=255)
                                                                                   cGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta                    >  1:9018887/1‑101 (MQ=255)
                                                                                      tgtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATac                 >  1:1029699/1‑101 (MQ=255)
                                                                                            cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACtt           >  1:11445661/1‑101 (MQ=255)
                                                                                             aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACttt          >  1:1751409/1‑101 (MQ=255)
                                                                                                 taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGTTTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg      <  1:7030210/101‑1 (MQ=38)
                                                                                                 taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg      <  1:6777446/101‑1 (MQ=38)
                                                                                                 taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg      <  1:3182621/101‑1 (MQ=38)
                                                                                                  aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAgg     <  1:2777023/101‑1 (MQ=37)
                                                                                                   cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGc    <  1:6399708/101‑1 (MQ=35)
                                                                                                     |                                                                                                    
GGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCA‑TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGT  >  NC_007779/1097665‑1097865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.