| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,188,902 | 1 | .→A | 0.7% | 2.8 ‑1.8 ‑0.2 | 281 | coding (366/750 nt) | yqiH | periplasmic pilin chaperone |
| Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | ||||||||||
| Reads supporting (aligned to +/- strand): new base (0/2): ref base (164/115): total (164/117) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.72e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.73e-01 | ||||||||||
Only 100 of 318 total aligned reads displayed.
TTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTACGAAA > NC_007779/3188802‑3189002 | tCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑a < 1:3702628/101‑1 (MQ=255) tCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑a < 1:3096311/101‑1 (MQ=255) cAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑aa > 1:7972875/1‑101 (MQ=255) cAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACAGCCCAAAACAGAT‑aa > 1:3010717/1‑101 (MQ=255) aaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑aaaa < 1:7725478/101‑1 (MQ=255) gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAt > 1:3930672/1‑101 (MQ=255) gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAt > 1:10511586/1‑101 (MQ=255) gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAt > 1:9038201/1‑101 (MQ=255) aTGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAtgt < 1:8837244/101‑1 (MQ=255) tGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAtgtg < 1:229858/101‑1 (MQ=255) tGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAAtgtg > 1:3209933/1‑101 (MQ=255) gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGa > 1:1603062/1‑101 (MQ=255) gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGa < 1:11807931/101‑1 (MQ=255) tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATg > 1:7271745/1‑101 (MQ=255) tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATg < 1:5133847/101‑1 (MQ=255) aCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCa > 1:6658873/1‑101 (MQ=255) aCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCa < 1:1026864/101‑1 (MQ=255) cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCaa < 1:11666710/101‑1 (MQ=255) cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCaa < 1:1289781/101‑1 (MQ=255) cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCaa > 1:2518639/1‑101 (MQ=255) cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCaa < 1:4681331/101‑1 (MQ=255) tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAg > 1:7827156/1‑101 (MQ=255) tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAg < 1:1697821/101‑1 (MQ=255) tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAg < 1:5368616/101‑1 (MQ=255) cAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGt > 1:7493259/1‑101 (MQ=255) aGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTc > 1:11173399/1‑101 (MQ=255) gAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCAc > 1:9120985/1‑101 (MQ=255) aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTa < 1:5392683/101‑1 (MQ=255) aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTAt < 1:1800433/101‑1 (MQ=255) aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATg > 1:4169225/1‑101 (MQ=255) aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATg > 1:5079439/1‑101 (MQ=255) aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATg > 1:10033495/1‑101 (MQ=255) aaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATgc > 1:10831206/1‑101 (MQ=255) ttGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATgcag > 1:3454703/1‑101 (MQ=255) tGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATgcagc < 1:5524028/101‑1 (MQ=255) tGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATgcagc < 1:9978516/101‑1 (MQ=255) gCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATgcagca < 1:2472693/101‑1 (MQ=255) cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCAc < 1:8144561/101‑1 (MQ=255) cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCAc > 1:563102/1‑101 (MQ=255) aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa > 1:4153738/1‑101 (MQ=255) aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt > 1:5763739/1‑101 (MQ=255) aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt < 1:9721145/101‑1 (MQ=255) aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt > 1:5228583/1‑101 (MQ=255) ttCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTg < 1:4891282/101‑1 (MQ=255) tCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGa > 1:3358878/1‑101 (MQ=255) ccTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGaa > 1:5856364/1‑101 (MQ=255) aaaGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc < 1:7524393/101‑1 (MQ=255) aaaGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACt < 1:7573368/101‑1 (MQ=255) aaGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa > 1:9090461/1‑101 (MQ=255) aGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt > 1:10636757/1‑101 (MQ=255) aGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt > 1:6819534/1‑101 (MQ=255) aGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt < 1:921060/101‑1 (MQ=255) cAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGAAGCAAGTCACTATGCAGCACGCATTGAAACTATTCt > 1:7177228/1‑101 (MQ=255) agagAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg < 1:6465669/101‑1 (MQ=255) agagAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg > 1:10934836/1‑101 (MQ=255) gagaAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTgg > 1:2325945/1‑101 (MQ=255) gagaAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTgg > 1:4409794/1‑101 (MQ=255) gagaAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATATGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTgg > 1:2865721/1‑101 (MQ=255) gaAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg > 1:3645730/1‑101 (MQ=255) aaCGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcggc > 1:4443574/1‑101 (MQ=255) aCGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGcc < 1:2250743/101‑1 (MQ=255) aCGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGcc > 1:8469117/1‑101 (MQ=255) ctctTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa > 1:48118/1‑101 (MQ=255) ctctTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa < 1:6107282/101‑1 (MQ=255) tctATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc > 1:11853250/1‑101 (MQ=255) tctATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc < 1:352546/101‑1 (MQ=255) tATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCAt < 1:6378313/101‑1 (MQ=255) ttAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGaa < 1:11361394/101‑1 (MQ=255) tAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAt > 1:3289667/1‑101 (MQ=255) tAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAt > 1:8570468/1‑101 (MQ=255) aaCGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAtt > 1:6542044/1‑101 (MQ=255) aaCGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAtt > 1:8297342/1‑101 (MQ=255) aaCGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAAtt > 1:9859894/1‑101 (MQ=255) aaCGGGGGAGAAATACCGCCCAAAACAGAT‑‑AAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTa < 1:4614567/101‑1 (MQ=255) aCGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTa > 1:7687014/1‑101 (MQ=255) cGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTag > 1:4530957/1‑101 (MQ=255) cGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTag > 1:3784920/1‑101 (MQ=255) gCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTagaag > 1:3854036/1‑101 (MQ=255) gCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTagaag > 1:607595/1‑101 (MQ=255) gtgaAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGAc < 1:8538725/99‑1 (MQ=255) gagaAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGAc < 1:9777642/101‑1 (MQ=255) agaAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACg < 1:11229374/101‑1 (MQ=255) aaaTACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGAt > 1:10163825/1‑101 (MQ=255) aTACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATgg < 1:8974424/101‑1 (MQ=255) tACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATggg > 1:7640058/1‑101 (MQ=255) aCCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATgggg < 1:6816316/101‑1 (MQ=255) cGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTa > 1:3601701/1‑101 (MQ=255) gCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTaa > 1:8428528/1‑101 (MQ=255) gCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTaa > 1:5461793/1‑101 (MQ=255) gCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTaa > 1:9303137/1‑101 (MQ=255) cccAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAAt > 1:746375/1‑101 (MQ=255) cccAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAAt > 1:7004213/1‑101 (MQ=255) cAAAACAGAT‑AAAAAAAATGTGATGCGAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGa < 1:272788/101‑1 (MQ=255) aaaaCAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGAc < 1:11469782/101‑1 (MQ=255) aaCAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACtt > 1:196938/1‑101 (MQ=255) aCAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTa < 1:2154603/101‑1 (MQ=255) cAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTAc > 1:10368683/1‑101 (MQ=255) aT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTACGaa < 1:2042315/101‑1 (MQ=255) aT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTACGaa > 1:9604181/1‑101 (MQ=255) t‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTACGaaa < 1:11013535/101‑1 (MQ=255) | TTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGAATTAGAAGACGATGGGGTAATGACTTACGAAA > NC_007779/3188802‑3189002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |