| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,334,550 | 1 | .→C | 0.7% | 2.8 ‑1.8 ‑0.3 | 269 | intergenic (+14/‑214) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator |
| Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | ||||||||||
| Reads supporting (aligned to +/- strand): new base (2/0): ref base (106/161): total (108/161) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.60e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.10e-01 | ||||||||||
Only 100 of 292 total aligned reads displayed.
ATCGCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGA > NC_007779/3334450‑3334650 tCGCAGCGTTACAGGTGCTCCCGGACCCCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATc < 1:5873773/101‑1 (MQ=255) tCGCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATc < 1:4755894/101‑1 (MQ=255) cGCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATcc > 1:3576017/1‑101 (MQ=255) gCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATccc > 1:3712743/1‑101 (MQ=255) gCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATccc < 1:4267722/101‑1 (MQ=255) gCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATccc > 1:6212408/1‑101 (MQ=255) gCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATccc < 1:6023412/101‑1 (MQ=255) aGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCcgc > 1:11448278/1‑101 (MQ=255) cGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCgcgc < 1:3804867/101‑1 (MQ=255) gTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATcccccccc > 1:2515805/1‑96 (MQ=255) gTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCa > 1:3483659/1‑101 (MQ=255) tACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAgc > 1:4313408/1‑101 (MQ=255) aGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAgcgcg > 1:7015513/1‑101 (MQ=255) tGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCgg > 1:4458985/1‑101 (MQ=255) cTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGa < 1:3739325/101‑1 (MQ=255) cTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCCCCGCGCGCcggg > 1:2370104/1‑100 (MQ=255) tCCCGGACCCCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGAt < 1:4796429/101‑1 (MQ=255) cccGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATg < 1:6152959/101‑1 (MQ=255) cccGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATg < 1:8252475/101‑1 (MQ=255) cGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCCGCGCGCGGGATGGt > 1:6695099/1‑101 (MQ=255) ggACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGtt < 1:5216948/101‑1 (MQ=255) ggACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGtt > 1:11154060/1‑101 (MQ=255) cacCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCa < 1:3245663/101‑1 (MQ=255) acCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCAGCGCGCGGGGTgggttccg > 1:4205451/1‑95 (MQ=255) ccccTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGt < 1:4847330/101‑1 (MQ=255) ccccTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGt < 1:5844914/101‑1 (MQ=255) ccccTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGt < 1:1003934/101‑1 (MQ=255) ccTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑aa > 1:11051284/1‑101 (MQ=255) cGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGGTGGTTCCAGT‑AAG‑TTCCa > 1:392219/1‑101 (MQ=255) cGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCa < 1:1439352/101‑1 (MQ=255) gagaAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCAt < 1:981543/101‑1 (MQ=255) gaAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATaa < 1:2220932/101‑1 (MQ=255) aCTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAaca < 1:2946279/101‑1 (MQ=255) cTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCACCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAacac < 1:9918976/101‑1 (MQ=255) tCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACt > 1:7108704/1‑101 (MQ=255) cATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACtt > 1:1771798/1‑101 (MQ=255) aTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTa > 1:1659102/1‑101 (MQ=255) tCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTAt > 1:9649649/1‑101 (MQ=255) ggCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGGTGGGTCCAGG‑AAG‑TTCCATAAAAACACTTATTc > 1:8908500/1‑101 (MQ=255) ggCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCCCAGGGGGCGGGGTGGTTTCCGT‑AAGATTCCTTAAAAACA‑TTATTc > 1:10406804/1‑101 (MQ=255) ccTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAg < 1:11758427/101‑1 (MQ=255) ccTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAg > 1:1188294/1‑101 (MQ=255) ccTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAg < 1:4933822/101‑1 (MQ=255) cTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGc < 1:2656693/101‑1 (MQ=255) cTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGc < 1:9435635/101‑1 (MQ=255) cTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGc > 1:5037994/1‑101 (MQ=255) tCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGct < 1:7995358/101‑1 (MQ=255) tCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑‑AG‑TTTCATAAAAAAACTTATTTCGctc > 1:1314499/1‑101 (MQ=255) gcgcACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGctct < 1:4688106/101‑1 (MQ=255) gcgcACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGctct > 1:1108500/1‑101 (MQ=255) cgcACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCta < 1:1362084/101‑1 (MQ=255) cgcACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCta < 1:11193711/101‑1 (MQ=255) cacaTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCtata < 1:5113722/101‑1 (MQ=255) cacaTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCtata < 1:10976340/101‑1 (MQ=255) caTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAac < 1:10643348/101‑1 (MQ=255) aTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAaca > 1:11255301/1‑101 (MQ=255) tCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAacac < 1:6853757/101‑1 (MQ=255) cGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACAcc > 1:5391715/1‑101 (MQ=255) gCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCt < 1:2830938/101‑1 (MQ=255) gCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCt > 1:9359580/1‑101 (MQ=255) tGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGa < 1:7713245/101‑1 (MQ=255) tGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGa > 1:11666438/1‑101 (MQ=255) tGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCCCAGCGCGCGGGGGGGGTTCAGTAAAG‑TTCC‑TAAAAAAAATTATTTAACTCTTTAAAACCCGa > 1:257759/1‑101 (MQ=255) tCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaa < 1:9149746/101‑1 (MQ=255) aaCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGGTGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAAt > 1:11382147/1‑101 (MQ=255) aaCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAAt < 1:10787728/101‑1 (MQ=255) aaCGCGATCGTTAATCCCCTCCCCTCATCCCCCGCAGCGCGCGGGGTGGGTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGaaaaaa > 1:649520/1‑100 (MQ=255) aaCGCGATCGTTAATCCCCTCCCCTCATCCCCCCCAACGCCGGGGGGGGTTCCAGG‑AAA‑TTCCATAAAAACACCTATTTCGCTCTCTAACACCCGaaaaaa > 1:10582409/1‑100 (MQ=255) aCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATa < 1:1610128/101‑1 (MQ=255) aCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATa > 1:9501921/1‑101 (MQ=255) aCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATa < 1:10678773/101‑1 (MQ=255) cgcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAg < 1:2802717/101‑1 (MQ=255) gcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAgg < 1:8513467/101‑1 (MQ=255) gcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAgg < 1:1691568/101‑1 (MQ=255) gcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAgg < 1:3901101/101‑1 (MQ=255) gcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAgg < 1:4032517/101‑1 (MQ=255) gcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAgg < 1:4542791/101‑1 (MQ=255) gATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGGTGGTTCCCGT‑AAG‑TTCCATTAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGa > 1:3099038/1‑101 (MQ=255) aTCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGAt < 1:557666/101‑1 (MQ=255) aTCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGAt < 1:5420150/101‑1 (MQ=255) tAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCa > 1:9082621/1‑101 (MQ=255) tAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCa < 1:7268329/101‑1 (MQ=255) aaTCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCAt < 1:8884023/101‑1 (MQ=255) aaTCCCCTCCCCTCATCCCCCCCCGCGCGCGGGGGGGGTCCCGT‑AAA‑TTTCCTAAAAAAACCTTTTTCCCTCTTTTACACCTCAAAAAAAAGGGTGGGCAt > 1:8297353/1‑101 (MQ=255) aTCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATc < 1:8459056/101‑1 (MQ=255) aTCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATc < 1:8689381/101‑1 (MQ=255) tcccctccccTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCt < 1:1643513/101‑1 (MQ=255) tcccctccccTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCt < 1:7878306/101‑1 (MQ=255) cccctcccctCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCtt < 1:5644454/101‑1 (MQ=255) cctcccctcATCCCGCGCAGCGCGCGGGGGGGGTGCCCT‑AAG‑TTTCCTAAAAAAACATATTTAGCTCTATAAAACCCGAAAAAAAAGGATGTGCATCTTta > 1:8387365/1‑101 (MQ=255) cctcccctcATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTta < 1:1001050/101‑1 (MQ=255) ctcccctcATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtat > 1:7383672/1‑101 (MQ=255) cccctcATCCCGCGCAGCGCGCGGGGTGGGTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtatat > 1:8154345/1‑101 (MQ=255) ccctcATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTtatata > 1:1500872/1‑101 (MQ=255) cctcATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTatatat < 1:1956685/101‑1 (MQ=255) ctcATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATAtt < 1:10876324/101‑1 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTg < 1:9059674/101‑1 (MQ=255) aTCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTg > 1:3413928/1‑101 (MQ=255) tCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGa < 1:7149835/101‑1 (MQ=255) tCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGa > 1:10549534/1‑101 (MQ=255) ATCGCAGCGTTACAGGTGCTCCCGGACACCCCTTGGCGAGAAGCACTCATCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGCGCGCGGGATGGTTCCAGT‑AAG‑TTCCATAAAAACACTTATTCAGCTCTATAACACCTGAAAAATAGGGATGTGCATCTTTATATATTCTGA > NC_007779/3334450‑3334650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |