Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,478,3951.→T 0.8% 1.9 ‑0.7 ‑0.0259intergenic (‑204/+63)oxyR/argHDNA‑binding transcriptional dual regulator/argininosuccinate lyase
Rejected: E-value exceeds prediction threshold.
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (0/2):  ref base (129/128):  total (129/130)
Fisher's exact test strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.95e-01

Only 100 of 292 total aligned reads displayed.

CGGCACCTCTTTTAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTGCG  >  NC_007779/3478296‑3478495
                                                                                                    |                                                                                                    
cGGCACCTCTTTTAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑t                                                                                                     >  1:3511258/1‑101 (MQ=255)
     ccTCTTTTAACCCTTGAAGTCACTGCCCGTTTCGAGGGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑attttt                                                                                                >  1:2148893/1‑101 (MQ=255)
      ctctTTTAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑ttttttt                                                                                               <  1:7488131/101‑1 (MQ=255)
        ctTTTAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTg                                                                                             >  1:10827839/1‑101 (MQ=255)
         ttttAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGc                                                                                            >  1:7781952/1‑101 (MQ=255)
           ttAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCa                                                                                          >  1:2297516/1‑101 (MQ=255)
            tAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCAt                                                                                         <  1:11874159/101‑1 (MQ=255)
             aaCCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATa                                                                                        <  1:10585476/101‑1 (MQ=255)
             aaCCCTGGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATa                                                                                        <  1:3822526/101‑1 (MQ=255)
              aCCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATaa                                                                                       <  1:11760143/101‑1 (MQ=255)
               cccTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATaaa                                                                                      >  1:11202087/1‑101 (MQ=255)
                   tGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAg                                                                                  <  1:3892731/101‑1 (MQ=255)
                   tGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAg                                                                                  >  1:10538925/1‑101 (MQ=255)
                   tGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAg                                                                                  <  1:7744869/101‑1 (MQ=255)
                   tGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAg                                                                                  >  1:10455811/1‑101 (MQ=255)
                   tGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAg                                                                                  >  1:720629/1‑101 (MQ=255)
                    gAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGc                                                                                 >  1:9508100/1‑101 (MQ=255)
                     aaGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGcc                                                                                <  1:11174239/101‑1 (MQ=255)
                      aGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGccc                                                                               <  1:2739139/101‑1 (MQ=255)
                      aGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGccc                                                                               <  1:7268251/101‑1 (MQ=255)
                       gTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCg                                                                              >  1:4062289/1‑101 (MQ=255)
                        tCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCgg                                                                             <  1:7574051/101‑1 (MQ=255)
                         cACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGc                                                                            >  1:2007743/1‑101 (MQ=255)
                          aCTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCg                                                                           <  1:4695083/101‑1 (MQ=255)
                          aCTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCg                                                                           <  1:601960/101‑1 (MQ=255)
                          aCTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCg                                                                           <  1:116459/101‑1 (MQ=255)
                           cTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGa                                                                          <  1:8215531/101‑1 (MQ=255)
                            tGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGAt                                                                         >  1:3054343/1‑101 (MQ=255)
                            tGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGAt                                                                         >  1:5356753/1‑101 (MQ=255)
                            tGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGAt                                                                         >  1:2858296/1‑101 (MQ=255)
                             gCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATa                                                                        <  1:10913095/101‑1 (MQ=255)
                                  tttCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCa                                                                   <  1:7419397/101‑1 (MQ=255)
                                  tttCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCa                                                                   >  1:7334356/1‑101 (MQ=255)
                                  tttCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCa                                                                   <  1:4479735/101‑1 (MQ=255)
                                   ttCGAGAGTTTCTCAACTCGAATAACGAAAGCCAACGTGAACTTTTGCGGATCTCCCGGATCCGCTTTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCa                                                                   <  1:7647755/101‑1 (MQ=255)
                                      gagaGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCt                                                               >  1:5265391/1‑101 (MQ=255)
                                       agagTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTc                                                              <  1:8468345/101‑1 (MQ=255)
                                         agTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCaa                                                            >  1:8753175/1‑101 (MQ=255)
                                          gTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCaaa                                                           >  1:10035165/1‑101 (MQ=255)
                                           tttCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAAt                                                          <  1:576929/101‑1 (MQ=255)
                                           tttCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAAt                                                          >  1:9068254/1‑101 (MQ=255)
                                           tttCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAAt                                                          >  1:9163777/1‑101 (MQ=255)
                                           tttCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAAt                                                          <  1:8802041/101‑1 (MQ=255)
                                             tctcAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAAttt                                                        <  1:6680067/101‑1 (MQ=255)
                                              ctcAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTta                                                       <  1:850843/101‑1 (MQ=255)
                                               tcAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTtat                                                      >  1:2477631/1‑101 (MQ=255)
                                                 aaCTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATAc                                                    <  1:5176225/101‑1 (MQ=255)
                                                 aaCTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATAc                                                    <  1:2046852/101‑1 (MQ=255)
                                                   cTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACat                                                  >  1:317052/1‑101 (MQ=255)
                                                    tCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACata                                                 <  1:1640072/101‑1 (MQ=255)
                                                    tCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACata                                                 >  1:4500084/1‑101 (MQ=255)
                                                     cGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACatat                                                <  1:5047848/101‑1 (MQ=255)
                                                     cGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACatat                                                <  1:3442087/101‑1 (MQ=255)
                                                         tAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAAt                                            <  1:5433723/101‑1 (MQ=255)
                                                              aaaGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCt                                       >  1:6085282/1‑101 (MQ=255)
                                                              aaaGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCt                                       >  1:3477801/1‑101 (MQ=255)
                                                              aaaGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCt                                       <  1:168066/101‑1 (MQ=255)
                                                               aaGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCtt                                      <  1:6254903/101‑1 (MQ=255)
                                                               aaGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCtt                                      >  1:9309608/1‑101 (MQ=255)
                                                                aGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTa                                     <  1:4907868/101‑1 (MQ=255)
                                                                aGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTa                                     >  1:6858814/1‑101 (MQ=255)
                                                                 gCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTAc                                    <  1:2348166/101‑1 (MQ=255)
                                                                   cAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTAccc                                  >  1:11528184/1‑101 (MQ=255)
                                                                       gTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAAc                              <  1:2519891/101‑1 (MQ=255)
                                                                       gTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAAc                              >  1:1200880/1‑101 (MQ=255)
                                                                       gTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAAc                              <  1:11443343/101‑1 (MQ=255)
                                                                         gAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCg                            >  1:8963457/1‑101 (MQ=255)
                                                                            cTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGc                         <  1:1577367/101‑1 (MQ=255)
                                                                             ttttGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCCTAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAAACGAGcc                        >  1:1995213/1‑101 (MQ=255)
                                                                             ttttGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGcc                        >  1:9932020/1‑101 (MQ=255)
                                                                             ttttGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGcc                        <  1:5497307/101‑1 (MQ=255)
                                                                             ttttGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGcc                        >  1:1354230/1‑101 (MQ=255)
                                                                                  cGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTgcgc                   <  1:9256497/101‑1 (MQ=255)
                                                                                  cGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTgcgc                   <  1:2411477/101‑1 (MQ=255)
                                                                                    gATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCaa                 <  1:564605/101‑1 (MQ=255)
                                                                                     aTCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCaaa                >  1:2976042/1‑101 (MQ=255)
                                                                                       ctcCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAg              <  1:11572172/101‑1 (MQ=255)
                                                                                        tcCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGc             <  1:1105959/101‑1 (MQ=255)
                                                                                        tcCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGc             >  1:1786694/1‑101 (MQ=255)
                                                                                         ccAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAANANCa            <  1:9639704/101‑1 (MQ=255)
                                                                                         ccAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCa            >  1:8610478/1‑101 (MQ=255)
                                                                                         ccAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCa            >  1:2258184/1‑101 (MQ=255)
                                                                                          cAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCAGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCaa           >  1:103489/1‑101 (MQ=255)
                                                                                           aGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAAt          >  1:1475616/1‑101 (MQ=255)
                                                                                           aGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAAt          <  1:4126120/101‑1 (MQ=255)
                                                                                           aGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAAt          <  1:6577781/101‑1 (MQ=255)
                                                                                            ggATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATc         >  1:433526/1‑101 (MQ=255)
                                                                                            ggATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATc         <  1:7084940/101‑1 (MQ=255)
                                                                                            ggATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATc         <  1:10009953/101‑1 (MQ=255)
                                                                                              aTCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGc       >  1:2836341/1‑101 (MQ=255)
                                                                                              aTCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGc       >  1:1149807/1‑101 (MQ=255)
                                                                                              aTCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGAAATCGc       >  1:7945390/1‑101 (MQ=255)
                                                                                               tCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGcc      >  1:7899622/1‑101 (MQ=255)
                                                                                               tCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGcc      >  1:8411134/1‑101 (MQ=255)
                                                                                                ccGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCt     >  1:6454409/1‑101 (MQ=255)
                                                                                                  gC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTgc   >  1:321261/1‑101 (MQ=255)
                                                                                                  gC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTgc   <  1:11118226/101‑1 (MQ=255)
                                                                                                   c‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGTCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTgcg  >  1:3978661/1‑101 (MQ=255)
                                                                                                   c‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTgcg  >  1:337113/1‑101 (MQ=255)
                                                                                                   c‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTgcg  <  1:5931028/101‑1 (MQ=255)
                                                                                                    |                                                                                                    
CGGCACCTCTTTTAACCCTTGAAGTCACTGCCCGTTTCGAGAGTTTCTCAACTCGAATAACTAAAGCCAACGTGAACTTTTGCGGATCTCCAGGATCCGC‑TTTTTTTTGCCATAAAAAAGCCCGGCGATAAGCCAGGCTCAAATTTATACATATAAATGTTCTTACCCTAACCGAGCCTGCGCAAAAGCAATCGCCTGCG  >  NC_007779/3478296‑3478495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.