Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_007779	3,746,911	0	G→A	100.0%	2.4	2	intergenic (‑509/‑68)	mdtL/insH	multidrug efflux system protein/IS5 element protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (1/0):  total (1/1)

GTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746822‑3747005                                                                                          |                                                                                               ctGGGGGTTATCCAATTTAAACAGGGTCGCCAAATAAACGAACAACCCCAGCGTGACCCCAAAGAACGAACTGGCAACAGCTAAGTTAGAGaacaccagca                                                                                     <  1:4689541/100‑9 (MQ=255)                                                                                    tgTTAGGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGACCCATAGAACAGGGATCATCATGAGACATCAATTTACCTTCGCCGAc  >  1:8029267/2‑101 (MQ=11)                                                                                          |                                                                                               GTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746822‑3747005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.