Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_007779	3,746,917	0	T→G	100.0%	0.7	1	intergenic (‑515/‑62)	mdtL/insH	multidrug efflux system protein/IS5 element protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

AGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746905‑3747005             |                                                                                         tgTTAGGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGACCCATAGAACAGGGATCATCATGAGACATCAATTTACCTTCGCCGAc  >  1:8029267/2‑101 (MQ=11)             |                                                                                         AGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746905‑3747005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.