Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077793,800,7781.→A 0.8% 2.5 ‑1.5 ‑0.3260coding (357/819 nt)nlpAcytoplasmic membrane lipoprotein‑28
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (123/135):  total (125/135)
Fisher's exact test strand distribution p-value = 2.30e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.38e-01

Only 100 of 298 total aligned reads displayed.

TCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCAAAAAG  >  NC_007779/3800678‑3800878
                                                                                                     |                                                                                                    
tCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTcc                                                                                                       <  1:11382940/101‑1 (MQ=255)
 cTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTATTCC‑a                                                                                                     >  1:6830768/1‑101 (MQ=255)
  ttCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑aa                                                                                                    >  1:1874367/1‑101 (MQ=255)
    ccAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑aaaa                                                                                                  <  1:1904330/101‑1 (MQ=255)
    ccAGCATCGACCCNNNNNNNNNNANGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑aaaa                                                                                                  <  1:2656672/101‑1 (MQ=255)
     cAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑aaaaa                                                                                                 <  1:5210761/101‑1 (MQ=255)
     cAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑aaaaa                                                                                                 >  1:10003200/1‑101 (MQ=255)
        cATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAAt                                                                                              >  1:9050120/1‑101 (MQ=255)
        cATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAAt                                                                                              <  1:3822586/101‑1 (MQ=255)
         aTCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATc                                                                                             <  1:5057177/101‑1 (MQ=255)
         aTCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATc                                                                                             <  1:8765045/101‑1 (MQ=255)
         aTCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATc                                                                                             <  1:8469417/101‑1 (MQ=255)
          tCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCa                                                                                            <  1:3932147/101‑1 (MQ=255)
           cGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCaa                                                                                           >  1:7277523/1‑101 (MQ=255)
             acgcTTTCTTGAACAAGATAATCAGGCGCGTGGGTATAAACTGGTAACGGTGGGAAATACGTTTATATTTCCTATCGCGGGTTATTCC‑AGAAAAATTaaaa                                                                                         >  1:7032388/4‑101 (MQ=255)
             aCCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCaaaa                                                                                         <  1:3760488/101‑1 (MQ=255)
             aCCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCaaaa                                                                                         <  1:5388307/101‑1 (MQ=255)
              cccTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAAc                                                                                        <  1:166276/101‑1 (MQ=255)
              cccTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAAc                                                                                        >  1:7493818/1‑101 (MQ=255)
               ccTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTTC‑AAAAAAATCAAAAcc                                                                                       >  1:6105329/1‑101 (MQ=255)
               ccTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAAcc                                                                                       <  1:7086017/101‑1 (MQ=255)
                 tttCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGt                                                                                     <  1:2331203/101‑1 (MQ=255)
                  ttCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTg                                                                                    <  1:11862862/101‑1 (MQ=255)
                  ttCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTg                                                                                    <  1:5760737/101‑1 (MQ=255)
                  ttCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTg                                                                                    >  1:4353659/1‑101 (MQ=255)
                    cTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGgc                                                                                  <  1:2997203/101‑1 (MQ=255)
                    cTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGgc                                                                                  >  1:10022010/1‑101 (MQ=255)
                    cTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCCTGgc                                                                                  >  1:6602985/1‑101 (MQ=255)
                    cTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATAAAAACCGTGgc                                                                                  >  1:2012961/1‑101 (MQ=255)
                     ttGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGgcg                                                                                 <  1:10550910/101‑1 (MQ=255)
                      tGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTATTCC‑AAAAAAATCAAAACCGTGgcgc                                                                                >  1:1749415/1‑101 (MQ=255)
                        aaCAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCaa                                                                              <  1:2600401/101‑1 (MQ=255)
                        aaCAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTATTCC‑AAAAAAAACAAAACCGTGGCGCaa                                                                              >  1:7671911/1‑101 (MQ=255)
                           aaGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATa                                                                           <  1:5597137/101‑1 (MQ=255)
                           aaGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATa                                                                           <  1:8877465/101‑1 (MQ=255)
                           aaGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATa                                                                           <  1:10652416/101‑1 (MQ=255)
                            aGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATaa                                                                          <  1:10099480/101‑1 (MQ=255)
                            aGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTATTCC‑AAAAAAATCAAAACCGTGGCGCCAATaa                                                                          >  1:8440192/1‑101 (MQ=255)
                              aTAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATaaaa                                                                        <  1:5935344/101‑1 (MQ=255)
                                aaTCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAaaga                                                                      >  1:1584566/1‑101 (MQ=255)
                                  tCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAaagaag                                                                    <  1:9856624/101‑1 (MQ=255)
                                    aGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGgc                                                                  <  1:8196558/101‑1 (MQ=255)
                                     ggCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGCGGCGCAAATAAAAGAAGgcg                                                                 >  1:6316132/1‑101 (MQ=255)
                                       cgcATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGcgcg                                                               <  1:11644272/101‑1 (MQ=255)
                                       cgcATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑‑AAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGa                                                              <  1:1114188/101‑1 (MQ=255)
                                        gcATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGa                                                              >  1:10764068/1‑101 (MQ=255)
                                          aTGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACa                                                            <  1:3167304/101‑1 (MQ=255)
                                           tGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTATTCC‑AAAAAAATCCAAACCGTGGCGCAAATAAAAGAAGGCGCGACAg                                                           >  1:4759258/1‑101 (MQ=255)
                                            ggTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGt                                                          <  1:11782302/101‑1 (MQ=255)
                                               tataAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAAAAAAAGAAGGCGCGACAGAGGc                                                       >  1:4593344/1‑101 (MQ=255)
                                                ataAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCg                                                      <  1:8899213/101‑1 (MQ=255)
                                                ataAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCg                                                      <  1:7750758/101‑1 (MQ=255)
                                                ataAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCg                                                      >  1:10474103/1‑101 (MQ=255)
                                                ataAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGGTTTTCC‑AAAAAAATCAAAAACGTGGCGCAAATAAAAAAAGGCGCGACAGGGGCg                                                      >  1:2129803/1‑101 (MQ=255)
                                                 taAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGa                                                     <  1:4870784/101‑1 (MQ=255)
                                                  aaaCTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGAt                                                    <  1:3572115/101‑1 (MQ=255)
                                                     cTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATccc                                                 >  1:9460719/1‑101 (MQ=255)
                                                     cTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATccc                                                 <  1:11456763/101‑1 (MQ=255)
                                                       ggTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCa                                               <  1:11727393/101‑1 (MQ=255)
                                                         tAGCGGTGGGAAATCCGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAAc                                             <  1:6385150/101‑1 (MQ=255)
                                                            cGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGCTATTTC‑AAAAAAATCAAAACCGTGTCGCAAATAAAAAAAGGCGCGACCGTGGCGGTCCCCAAcaac                                          >  1:2682975/1‑101 (MQ=255)
                                                                 ggAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAAcgacccgac                                     <  1:6756124/101‑1 (MQ=255)
                                                                  gAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAAcgacccgacc                                    >  1:6528848/1‑101 (MQ=255)
                                                                   aaaTACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCa                                   <  1:6234860/101‑1 (MQ=255)
                                                                     aTACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAAc                                 >  1:4199447/1‑101 (MQ=255)
                                                                       aCGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCt                               <  1:2870406/101‑1 (MQ=255)
                                                                        cGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCtt                              >  1:6917929/1‑101 (MQ=255)
                                                                         gTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTg                             >  1:6449435/1‑101 (MQ=255)
                                                                         gTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTg                             <  1:6410861/101‑1 (MQ=255)
                                                                         gTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTg                             <  1:10187882/101‑1 (MQ=255)
                                                                          tttGTCTTCCCTATGGCGGGTTATTCCAAAAAAAATCAAAACCGGGGCGCAAATAAAAAAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTg                             >  1:8048155/1‑101 (MQ=255)
                                                                           ttGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCTAAACCCTGGGGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCCACGACCCGACCAACCTTggg                           >  1:8291758/1‑100 (MQ=255)
                                                                           ttGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGt                           <  1:7327181/101‑1 (MQ=255)
                                                                            tGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTc                          <  1:5303719/101‑1 (MQ=255)
                                                                             gTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTcg                         <  1:350566/101‑1 (MQ=255)
                                                                              tCTTCCCTATGGGGGGTTATTCA‑AAAAAAACAAAACCCGGGGCGAAAATAAAAGAGGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTcgc                        <  1:7862208/101‑1 (MQ=255)
                                                                                ttCCCTATGGCGGGTTATTCC‑AAAAAATTCAAAACCGGGGGGTAAATAAAAGGAGCCGATAGATGGTCGCTTCCCAACAACCCCCCTAACCTTGGTcaggg                      >  1:1709290/1‑97 (MQ=255)
                                                                                ttCCCTATGGCGGGGTTTTCC‑AAAAAAATCAAAACCGTGGGGCAAATAAAAGAAGGCGCGAGAGTGGCGATCCCCCACGACCCGCCCAACCTTCGTCgcgc                      >  1:5673210/1‑101 (MQ=255)
                                                                                 tCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCa                     >  1:9326409/1‑101 (MQ=255)
                                                                                 tCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCa                     >  1:6034105/1‑101 (MQ=255)
                                                                                  cccTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCAc                    <  1:4486901/101‑1 (MQ=255)
                                                                                   ccTATGGCGGGTTATTCC‑AAAAAAATCAAACCCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACt                   <  1:8120523/101‑1 (MQ=255)
                                                                                   ccTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACt                   <  1:11550379/101‑1 (MQ=255)
                                                                                    cTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACtt                  >  1:11077141/1‑101 (MQ=255)
                                                                                     tATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACttt                 <  1:1533615/101‑1 (MQ=255)
                                                                                       tGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTa               >  1:7234243/1‑101 (MQ=255)
                                                                                        ggCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTAc              >  1:3282931/1‑101 (MQ=255)
                                                                                        ggCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTAc              >  1:4540242/1‑101 (MQ=255)
                                                                                         gCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACt             >  1:1480960/1‑101 (MQ=255)
                                                                                          cGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTg            >  1:9389407/1‑101 (MQ=255)
                                                                                          cGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTg            >  1:9492149/1‑101 (MQ=255)
                                                                                            ggTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGtt          <  1:8394683/101‑1 (MQ=255)
                                                                                            ggTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGtt          <  1:2465701/101‑1 (MQ=255)
                                                                                                aTTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGTTCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaa      >  1:4332601/1‑101 (MQ=255)
                                                                                                aTTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaa      >  1:11211473/1‑101 (MQ=255)
                                                                                                 ttCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaaa     >  1:9603148/1‑101 (MQ=255)
                                                                                                  tCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaaaa    <  1:7917683/101‑1 (MQ=255)
                                                                                                  tCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaaaa    <  1:2260507/101‑1 (MQ=255)
                                                                                                   cc‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCaaaaa   >  1:2186918/1‑101 (MQ=255)
                                                                                                    c‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCAAAAag  <  1:9981001/101‑1 (MQ=255)
                                                                                                     |                                                                                                    
TCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCC‑AAAAAAATCAAAACCGTGGCGCAAATAAAAGAAGGCGCGACAGTGGCGATCCCCAACGACCCGACCAACCTTGGTCGCGCACTTTTACTGTTGCAAAAAG  >  NC_007779/3800678‑3800878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.