Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_00777934,1111.→T 1.8% 15.9 0.0 ‑0.0272intergenic (+73/‑189)carB/caiFcarbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (3/2):  ref base (140/127):  total (143/129)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.06e-01

Only 100 of 318 total aligned reads displayed.

GCAGGAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATACTAT  >  NC_007779/34011‑34211
                                                                                                      |                                                                                                    
gCAGGAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCg                                                                                                       >  1:7156910/1‑101 (MQ=255)
  aGGAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑tt                                                                                                    >  1:2230631/1‑101 (MQ=255)
   ggAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttt                                                                                                   <  1:10307065/101‑1 (MQ=255)
   ggAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttt                                                                                                   <  1:908961/101‑1 (MQ=255)
   ggAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttt                                                                                                   <  1:4040598/101‑1 (MQ=255)
     aaaTGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttttt                                                                                                 <  1:9673965/101‑1 (MQ=255)
     aaaTGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttttt                                                                                                 >  1:1510729/1‑101 (MQ=255)
      aaTGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑tttttt                                                                                                >  1:3481741/1‑101 (MQ=255)
      aaTGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑tttttt                                                                                                >  1:10985670/1‑101 (MQ=255)
        tGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑tttttttt                                                                                              >  1:6315629/1‑101 (MQ=255)
         gcacgcacAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑ttttttttt                                                                                             >  1:9746398/1‑101 (MQ=255)
           acgcacAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGc                                                                                           >  1:6964311/1‑101 (MQ=255)
           acgcacAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGc                                                                                           >  1:5897996/1‑101 (MQ=255)
             gcacAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGccc                                                                                         <  1:6009897/101‑1 (MQ=255)
             gcacAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGccc                                                                                         >  1:4299243/1‑101 (MQ=255)
              cacaGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCa                                                                                        >  1:11482308/1‑101 (MQ=255)
              cacaGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCa                                                                                        <  1:2743420/101‑1 (MQ=255)
              cacaGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCa                                                                                        >  1:9316881/1‑101 (MQ=255)
               acaGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCAt                                                                                       <  1:1710898/101‑1 (MQ=255)
               acaGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAACAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCAt                                                                                       >  1:11384996/1‑101 (MQ=255)
                 aGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTa                                                                                     <  1:1784411/101‑1 (MQ=255)
                   aTCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAg                                                                                   <  1:6483515/101‑1 (MQ=255)
                    tCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGt                                                                                  >  1:5308127/1‑101 (MQ=255)
                     cAAATAATAAGGTGTTAATGCAAATATTTTTCAACCCCTAATTTGATCGAATAACCAATACGGTTCTCTGAA‑GAAGACCG‑TTTTTTTTTGCCCATTAAGTa                                                                                 <  1:11891527/101‑1 (MQ=255)
                      aaaTAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTaa                                                                                <  1:286290/101‑1 (MQ=255)
                      aaaTAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTaa                                                                                <  1:1399875/101‑1 (MQ=255)
                       aataatAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTaaa                                                                               >  1:6838912/1‑101 (MQ=255)
                       aataatAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTaaa                                                                               <  1:2997577/101‑1 (MQ=255)
                        ataataGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAAt                                                                              <  1:4575558/101‑1 (MQ=255)
                         taataGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAAtg                                                                             <  1:7789729/101‑2 (MQ=255)
                           ataGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCtt                                                                           >  1:11602038/1‑101 (MQ=255)
                           ataGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCtt                                                                           >  1:3295181/1‑101 (MQ=255)
                             aGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCtttt                                                                         >  1:3451189/1‑101 (MQ=255)
                              gCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTg                                                                        >  1:11279595/1‑101 (MQ=255)
                                gtgtCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTggg                                                                      <  1:3600121/101‑1 (MQ=255)
                                   tCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTTGGGaa                                                                   <  1:7386838/101‑1 (MQ=255)
                                   tCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGaa                                                                   <  1:9568520/101‑1 (MQ=255)
                                     aTGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGATGCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAAGCTTTTGGGGAATc                                                                 <  1:5052426/101‑1 (MQ=255)
                                       ggCAAATTTTTTTAACCCCTTAATTGGATCAAAAACCAAATACGGTT‑TCTGGTGGGGGCCCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGa                                                               <  1:7021783/101‑1 (MQ=255)
                                        gCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGat                                                              >  1:10057135/1‑101 (MQ=255)
                                         cAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGata                                                             >  1:8824888/1‑101 (MQ=255)
                                            atatTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAttt                                                          >  1:5168643/1‑101 (MQ=255)
                                             tatTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAtttt                                                         <  1:6675511/101‑1 (MQ=255)
                                              atTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATAttttt                                                        >  1:3379237/1‑101 (MQ=255)
                                               tttttCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTtg                                                       <  1:11823865/101‑1 (MQ=255)
                                               tttttCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTtg                                                       <  1:4648113/101‑1 (MQ=255)
                                                  ttCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAA‑GAGGACCG‑TTTATTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTtgatg                                                    <  1:9226353/101‑1 (MQ=255)
                                                    cATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGAc                                                  <  1:8104114/101‑1 (MQ=255)
                                                     aTCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACa                                                 >  1:2029611/1‑101 (MQ=255)
                                                      tCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACAt                                                >  1:7307150/1‑101 (MQ=255)
                                                       ccGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATa                                               >  1:10880859/1‑101 (MQ=255)
                                                       ccGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATa                                               <  1:1034823/101‑1 (MQ=255)
                                                       ccGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATa                                               <  1:2158370/101‑1 (MQ=255)
                                                        cGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATaa                                              <  1:8767831/101‑1 (MQ=255)
                                                        cGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATaa                                              >  1:8496935/1‑101 (MQ=255)
                                                        cGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATaa                                              <  1:6756766/101‑1 (MQ=255)
                                                        cGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATaa                                              <  1:2600883/101‑1 (MQ=255)
                                                         gCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCCTTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAg                                             >  1:7842069/1‑101 (MQ=255)
                                                             aTTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAgg                                         <  1:1039378/101‑1 (MQ=255)
                                                             aTTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAgg                                         >  1:10572545/1‑101 (MQ=255)
                                                             aTTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑GTTTTTCTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAgg                                         <  1:8661631/101‑1 (MQ=255)
                                                              tttGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGa                                        <  1:9025259/101‑1 (MQ=255)
                                                               ttGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGAt                                       >  1:8446235/1‑101 (MQ=255)
                                                                tGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGAtt                                      <  1:6529306/101‑1 (MQ=255)
                                                                 gATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGAttt                                     >  1:10827087/1‑101 (MQ=255)
                                                                  aTCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTa                                    >  1:1944623/1‑101 (MQ=255)
                                                                  aTCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTa                                    <  1:8055870/101‑1 (MQ=255)
                                                                     gAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCt                                 <  1:3085611/101‑1 (MQ=255)
                                                                     gAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGCAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCt                                 >  1:2518338/1‑101 (MQ=255)
                                                                      aaTAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTc                                >  1:6565248/1‑101 (MQ=255)
                                                                           cTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACt                           <  1:9179575/101‑1 (MQ=255)
                                                                            tAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACtt                          <  1:2275866/101‑1 (MQ=255)
                                                                            tAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACtt                          <  1:6415717/101‑1 (MQ=255)
                                                                            tAATACGGTTCNCNNNN‑NNNNNNNN‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACtt                          <  1:104634/101‑1 (MQ=255)
                                                                             aaTACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTa                         <  1:111438/101‑1 (MQ=255)
                                                                             aaTACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTa                         >  1:3949523/1‑101 (MQ=255)
                                                                              aTACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTAt                        <  1:7579712/101‑1 (MQ=255)
                                                                              aTACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTAt                        <  1:10767223/101‑1 (MQ=255)
                                                                              aTACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTAt                        <  1:1467475/101‑1 (MQ=255)
                                                                               tACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATc                       <  1:948542/101‑1 (MQ=255)
                                                                               tACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATc                       <  1:6176958/101‑1 (MQ=255)
                                                                                aCGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCg                      >  1:5098797/1‑101 (MQ=255)
                                                                                 cGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGa                     <  1:3650701/101‑1 (MQ=255)
                                                                                  ggTTCTCTGAT‑GAGGACCG‑TTTTTTTATGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGAc                    <  1:8139341/101‑1 (MQ=255)
                                                                                     tctcTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGt                 >  1:5717627/1‑101 (MQ=255)
                                                                                     tctcTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGt                 <  1:11060778/101‑1 (MQ=255)
                                                                                      ctctGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTg                >  1:2422902/1‑101 (MQ=255)
                                                                                       tctGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGa               >  1:7630610/1‑101 (MQ=255)
                                                                                        ctGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGaa              >  1:4865791/1‑101 (MQ=255)
                                                                                         tgat‑gaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAg             >  1:5528217/1‑101 (MQ=255)
                                                                                         tgat‑gaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAg             <  1:2938487/101‑1 (MQ=255)
                                                                                          gat‑gaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGt            >  1:7439823/1‑101 (MQ=255)
                                                                                              gaGGACCGTTTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTg          <  1:9886148/101‑1 (MQ=255)
                                                                                              gaGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGc         <  1:11681958/101‑1 (MQ=255)
                                                                                                ggACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCAt       >  1:5833983/1‑101 (MQ=255)
                                                                                                ggACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCAt       <  1:5255066/101‑1 (MQ=255)
                                                                                                  aCCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATAc     >  1:574472/1‑101 (MQ=255)
                                                                                                    cG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATACTa   >  1:8264239/1‑101 (MQ=255)
                                                                                                     g‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATACTAt  <  1:2146291/101‑1 (MQ=255)
                                                                                                     g‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATACTAt  >  1:9825002/1‑101 (MQ=255)
                                                                                                      |                                                                                                    
GCAGGAAATGCACGCACAGATCAAATAATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGAT‑GAGGACCG‑TTTTTTTTTGCCCATTAAGTAAATCTTTTGGGGAATCGATATTTTTGATGACATAAGCAGGATTTAGCTCACACTTATCGACGGTGAAGTTGCATACTAT  >  NC_007779/34011‑34211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.