Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0077794,163,9661.→T 0.8% 2.7 0.0 ‑0.3253intergenic (+157/‑10)fkpA/yheOFKBP‑type peptidyl‑prolyl cis‑trans isomerase/DNA‑binding transcriptional regulator
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands.
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Reads supporting (aligned to +/- strand):  new base (1/1):  ref base (134/117):  total (135/118)
Fisher's exact test strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.54e-01

Only 100 of 287 total aligned reads displayed.

ATTAGTGCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTCTGAAAT  >  NC_007779/4163866‑4164066
                                                                                                     |                                                                                                    
aTTAGTGCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAgtg                                                                                                       <  1:6926209/101‑1 (MQ=255)
    gTGCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑tttt                                                                                                  >  1:10705058/1‑101 (MQ=255)
      gCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑tttttt                                                                                                >  1:7726307/1‑101 (MQ=255)
      gCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑tttttt                                                                                                <  1:8226972/101‑1 (MQ=255)
      gCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑tttttt                                                                                                <  1:1552991/101‑1 (MQ=255)
       cTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑ttttttt                                                                                               >  1:8714810/1‑101 (MQ=255)
         ggAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTc                                                                                             >  1:2119789/1‑101 (MQ=255)
          gAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCa                                                                                            <  1:4696521/101‑1 (MQ=255)
          gAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCa                                                                                            >  1:10442723/1‑101 (MQ=255)
            aaGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATg                                                                                          <  1:5842828/101‑1 (MQ=255)
             aGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGt                                                                                         >  1:1267666/1‑101 (MQ=255)
              gCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTc                                                                                        >  1:3527596/1‑101 (MQ=255)
              gCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAAGGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGGG‑TTTTTTTTCATGTc                                                                                        >  1:5120417/1‑101 (MQ=255)
                ggAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCa                                                                                      <  1:7819725/101‑1 (MQ=255)
                ggAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCa                                                                                      >  1:1751987/1‑101 (MQ=255)
                ggAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCa                                                                                      <  1:9549210/101‑1 (MQ=255)
                 gAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAg                                                                                     <  1:11717411/101‑1 (MQ=255)
                 gAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAg                                                                                     <  1:3433545/101‑1 (MQ=255)
                 gAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAg                                                                                     <  1:4042195/101‑1 (MQ=255)
                  aaCCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAgg                                                                                    >  1:11575763/1‑101 (MQ=255)
                   aCCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGt                                                                                   >  1:1379475/1‑101 (MQ=255)
                   aCCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGt                                                                                   <  1:10561861/101‑1 (MQ=255)
                   aCCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGt                                                                                   <  1:2770113/101‑1 (MQ=255)
                        cGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCtt                                                                              <  1:8729997/101‑1 (MQ=255)
                         gCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCttt                                                                             >  1:8884985/1‑101 (MQ=255)
                         gCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCttt                                                                             <  1:5253908/101‑1 (MQ=255)
                          cTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCtttt                                                                            <  1:4543775/101‑1 (MQ=255)
                           tGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTa                                                                           >  1:6933698/1‑101 (MQ=255)
                            gTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTaa                                                                          <  1:11871140/101‑1 (MQ=255)
                            gTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTaa                                                                          <  1:10080540/101‑1 (MQ=255)
                               ttAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCa                                                                       <  1:3350153/101‑1 (MQ=255)
                                tAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCaa                                                                      <  1:1942939/101‑1 (MQ=255)
                                tAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCaa                                                                      <  1:84971/101‑1 (MQ=255)
                                 aaTTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACTACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAAc                                                                     <  1:8658070/101‑1 (MQ=255)
                                     tAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGaaa                                                                 <  1:7218000/101‑1 (MQ=255)
                                     tAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGaaa                                                                 >  1:8794768/1‑101 (MQ=255)
                                     tAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGAG‑TTTTTTTTCATGTCCAGGTCGTTTTTAACCAACGaaa                                                                 >  1:8949186/1‑101 (MQ=255)
                                      aGTTACCCGCATCATTAAGGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAAc                                                                <  1:2578343/101‑1 (MQ=255)
                                        ttACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTGTTTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAAcc                                                               <  1:10829384/101‑1 (MQ=255)
                                         tACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAg                                                             >  1:6693298/1‑101 (MQ=255)
                                          aCCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGt                                                            <  1:9316314/101‑1 (MQ=255)
                                           cccGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGAGAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTg                                                           >  1:7077876/1‑101 (MQ=255)
                                           cccGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTg                                                           >  1:6371191/1‑101 (MQ=255)
                                            ccGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGa                                                          <  1:7164358/101‑1 (MQ=255)
                                            ccGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGa                                                          <  1:1814275/101‑1 (MQ=255)
                                               cgtcatTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGtt                                                       <  1:1118766/99‑1 (MQ=255)
                                               catcatTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGtt                                                       >  1:8117186/1‑101 (MQ=255)
                                                atcatTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTTACCCACAAAAcccacgaagtg                                                      >  1:10286428/1‑92 (MQ=255)
                                                     tAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGAttt                                                 <  1:5357457/101‑1 (MQ=255)
                                                      aaTGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTa                                                <  1:6249013/101‑1 (MQ=255)
                                                       aTGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTAc                                               >  1:5219129/1‑101 (MQ=255)
                                                         gAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTg                                             >  1:10054406/1‑101 (MQ=255)
                                                          aGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTgg                                            <  1:4192551/101‑1 (MQ=255)
                                                              tGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCa                                        <  1:9931915/101‑1 (MQ=255)
                                                              tGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCa                                        >  1:10880252/1‑101 (MQ=255)
                                                               gCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCaa                                       <  1:3094857/101‑1 (MQ=255)
                                                               gCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCaa                                       <  1:2232566/101‑1 (MQ=255)
                                                                   tGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTc                                   >  1:638029/1‑101 (MQ=255)
                                                                    gAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTcc                                  >  1:10147253/1‑101 (MQ=255)
                                                                    gAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTcc                                  <  1:3414038/101‑1 (MQ=255)
                                                                     aaaaGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCCTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCt                                 <  1:11302595/101‑1 (MQ=255)
                                                                       aaGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGTTTTACTGGATCAACGTCCttt                               >  1:4311337/1‑101 (MQ=255)
                                                                       aaGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCttt                               >  1:855394/1‑101 (MQ=255)
                                                                        aGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTc                              <  1:10960096/101‑1 (MQ=255)
                                                                        aGTGAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTc                              <  1:5455579/101‑1 (MQ=255)
                                                                         gTTAACGACGGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCg                             <  1:8476978/101‑1 (MQ=255)
                                                                         gTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCg                             >  1:7332712/1‑101 (MQ=255)
                                                                         gTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCg                             >  1:3682129/1‑101 (MQ=255)
                                                                         gTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCg                             >  1:11238076/1‑101 (MQ=255)
                                                                          ttAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGa                            <  1:1698040/101‑1 (MQ=255)
                                                                          ttAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGa                            >  1:2821393/1‑101 (MQ=255)
                                                                           tAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGAc                           >  1:9441486/1‑101 (MQ=255)
                                                                            aaCGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGAcc                          >  1:3598093/1‑101 (MQ=255)
                                                                             aCGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCa                         >  1:8434752/1‑101 (MQ=255)
                                                                             aCGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCa                         <  1:1443890/101‑1 (MQ=255)
                                                                              cGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAg                        <  1:9062036/101‑1 (MQ=255)
                                                                              cGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAg                        <  1:7453296/101‑1 (MQ=255)
                                                                                aCAGNCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAc                      >  1:1893061/1‑101 (MQ=255)
                                                                                aCAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAc                      <  1:1840425/101‑1 (MQ=255)
                                                                                aCAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAc                      >  1:235745/1‑101 (MQ=255)
                                                                                 cAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAcc                     <  1:3325757/101‑1 (MQ=255)
                                                                                 cAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAcc                     <  1:6140458/101‑1 (MQ=255)
                                                                                 cAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGAcc                     <  1:5644458/101‑1 (MQ=255)
                                                                                  aGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCg                    <  1:8002303/101‑1 (MQ=255)
                                                                                    gCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGAt                  >  1:5949249/1‑101 (MQ=255)
                                                                                    gCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGAt                  <  1:11651231/101‑1 (MQ=255)
                                                                                     cTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGAtt                 >  1:6871293/1‑101 (MQ=255)
                                                                                      tCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGAttt                <  1:7026124/101‑1 (MQ=255)
                                                                                        cTGAACAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTg              >  1:2889898/1‑101 (MQ=255)
                                                                                          gAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGat            <  1:4944957/101‑1 (MQ=255)
                                                                                           aaaaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGata           >  1:919853/1‑101 (MQ=255)
                                                                                           aaaaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGata           >  1:4739165/1‑101 (MQ=255)
                                                                                           aaaaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGata           <  1:4995186/101‑1 (MQ=255)
                                                                                             aaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATAtt         >  1:10003879/1‑101 (MQ=255)
                                                                                             aaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATAtt         <  1:7485426/101‑1 (MQ=255)
                                                                                             aaGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATAtt         <  1:3870152/101‑1 (MQ=255)
                                                                                              aGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTc        <  1:9003818/101‑1 (MQ=255)
                                                                                               ggAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTCt       <  1:3986642/101‑1 (MQ=255)
                                                                                                 aGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTCTGa     <  1:2319147/101‑1 (MQ=255)
                                                                                                 aGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTCTGa     >  1:3743783/1‑101 (MQ=255)
                                                                                                     |                                                                                                    
ATTAGTGCTGGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTG‑TTTTTTTTCATGTCCAGGTCGCTTTTAACCAACGAAACCAGTGAGTTGGATTTACTGGATCAACGTCCTTTCGACCAGACCGATTTTGATATTCTGAAAT  >  NC_007779/4163866‑4164066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.