Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_007779	223,989	0	T→C	100.0%	‑0.2	1	noncoding (219/1542 nt)	rrsH	16S ribosomal RNA
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

CATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCG  >  NC_007779/223948‑224048                                          |                                                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTCGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGAACGGGCTAACCAAgcgg  >  1:5443360/1‑98 (MQ=1)                                          |                                                            CATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCG  >  NC_007779/223948‑224048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.