BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980091 =	0 (0.000)	235 (0.670)	114/180	NT	100%	intergenic (‑171/+264)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980209 =	NA (NA)	235 (0.670)	114/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 261 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                  <  1:2954938/101‑1 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaag                                                                                                  <  1:5259695/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 <  1:10222284/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 <  1:7678687/101‑1 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 >  1:10846350/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 >  1:6849441/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaagg                                                                                                 <  1:11361772/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaag                                                                                              >  1:4871075/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTaaggaag                                                                                              >  1:4548134/1‑101 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGt                                                                                            >  1:7264155/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                           >  1:2613955/1‑101 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTg                                                                                           <  1:8123848/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                        <  1:17193872/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                        <  1:7520876/101‑1 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTCCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                        <  1:9807605/101‑1 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                       <  1:8538167/101‑1 (MQ=255)

           tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGaa                                                                                       <  1:188752/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                      <  1:3364599/101‑1 (MQ=255)

            aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAt                                                                                      >  1:14063522/1‑101 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                     <  1:6269366/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                    <  1:5889684/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                    <  1:13287715/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                    <  1:14179083/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                   <  1:1321081/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                   <  1:8433399/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                  <  1:10964752/101‑1 (MQ=255)

                ctCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                  <  1:4081116/100‑1 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCg                                                                                 <  1:17754291/101‑1 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgg                                                                                >  1:9048473/1‑101 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                               >  1:2078581/1‑101 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                               <  1:11106507/101‑1 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                               <  1:7559270/101‑1 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑a                                                                            >  1:2028828/1‑101 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑a                                                                            >  1:15372328/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAtt                                                                        >  1:1637367/1‑101 (MQ=255)

                         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAtt                                                                        <  1:5525389/101‑1 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAttc                                                                       <  1:16450641/101‑1 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAttc                                                                       >  1:2431546/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAttc                                                                       >  1:4492973/1‑101 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAttctt                                                                     >  1:7419916/1‑101 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAAttctt                                                                     >  1:879324/1‑101 (MQ=255)

                             cataaaggggAGGGGGGCTGTTATTTTAAATAAGGTGTGATGCAGATCACAAAAAACACTAAATTACTAAAGGAAGGGGCAAAAAAGCGGGG‑AAAttcttc                                                                    <  1:9305108/93‑1 (MQ=255)

                              aTACAACGGATGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCATACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATtcttct                                                                   >  1:11233723/1‑101 (MQ=255)

                               tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTtctc                                                                  >  1:7117843/1‑101 (MQ=255)

                               tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTtctc                                                                  >  1:6535262/1‑101 (MQ=255)

                                aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCg                                                                 >  1:148598/1‑101 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCgg                                                                >  1:497462/1‑101 (MQ=255)

                                   aggggggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCt                                                              <  1:13367914/96‑1 (MQ=255)

                                   aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCt                                                              >  1:16111854/1‑101 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGAc                                                           >  1:2196500/1‑101 (MQ=255)

                                             gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtca                                                    >  1:14253714/1‑101 (MQ=255)

                                                  gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttca                                               >  1:15474962/1‑101 (MQ=255)

                                                   tttttAAAAAATGCGTGAGGAAAACCACACAAACCACTCAATTACTAAAGGAGGGTGAAAATAGGGGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttcat                                              <  1:4207716/100‑1 (MQ=12)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:16329773/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:12687649/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:560517/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:15497907/1‑101 (MQ=255)

                                                     tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTcatttcattt                                            >  1:12401200/1‑101 (MQ=255)

                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCatttcatttc                                           >  1:10296285/1‑101 (MQ=255)

                                                       tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                          >  1:3104783/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     >  1:16668693/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                    >  1:306189/1‑101 (MQ=255)

                                                             atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                    >  1:3217264/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:2142367/1‑101 (MQ=255)

                                                                 gTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                >  1:13234283/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                               >  1:13662767/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                               >  1:6993761/1‑101 (MQ=255)

                                                                  tGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg                               >  1:17484280/1‑101 (MQ=255)

                                                                   attgaaattCACAAAAACCCCTCAATTCTTTAAGAAAGGTGCAAATAACGGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                              <  1:11539923/93‑1 (MQ=11)

                                                                    aTGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                             >  1:16747814/1‑101 (MQ=255)

                                                                     tGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                            >  1:12643978/1‑101 (MQ=255)

                                                                       cAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                          >  1:5585384/1‑101 (MQ=255)

                                                                       aaaaccaaaaaaaaCACAAAATTA‑TTAAGGGAGGGGGAAAAAAGGGGGGAAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                          <  1:10374141/91‑1 (MQ=0)

                                                                        aGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                         >  1:3763667/1‑101 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:1917128/1‑101 (MQ=255)

                                                                         gATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:17037748/1‑101 (MQ=255)

                                                                            cacacaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                     >  1:5716484/1‑101 (MQ=255)

                                                                            cacacaAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                     >  1:10708598/1‑101 (MQ=255)

                                                                                caAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                 >  1:13590521/1‑101 (MQ=255)

                                                                                    acacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa             <  1:14746612/101‑1 (MQ=255)

                                                                                     cacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa            >  1:614785/1‑101 (MQ=40)

                                                                                      acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:14391146/1‑101 (MQ=40)

                                                                                      acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:11289748/1‑101 (MQ=40)

                                                                                       cTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt          >  1:12077426/1‑101 (MQ=39)

                                                                                       cTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt          >  1:10130180/1‑101 (MQ=39)

                                                                                        tCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:15795227/1‑101 (MQ=38)

                                                                                        tCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:9436054/1‑101 (MQ=38)

                                                                                         cAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc        >  1:17107540/1‑101 (MQ=37)

                                                                                          aaTTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:10635041/1‑101 (MQ=35)

                                                                                          aaTTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:11622767/1‑101 (MQ=35)

                                                                                          aaTTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:3968492/1‑101 (MQ=35)

                                                                                           aTTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt      >  1:17615600/1‑101 (MQ=34)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATCCCTTg    >  1:15752162/1‑101 (MQ=17)

                                                                                             tACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCAGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg    >  1:781900/1‑101 (MQ=17)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:10012213/1‑101 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:12945631/1‑101 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   <  1:4038699/101‑1 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   <  1:8659735/101‑1 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:365436/1‑101 (MQ=31)

                                                                                              aCTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:17714389/1‑101 (MQ=31)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGG‑AAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.