mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,410,956 | 1 | .→T | 1.0% | 11.4 0.0 ‑0.7 | 408 | intergenic (+209/‑269) | ydaN/dbpA | Zn(II) transporter/ATP‑dependent RNA helicase‑specific for 23S rRNA |
| * | NC_007779 | 229,036 | 1 | .→T | 1.0% | 10.6 ‑0.5 ‑0.5 | 409 | intergenic (+32/‑131) | aspU/dkgB | tRNA‑Asp/2,5‑diketo‑D‑gluconate reductase B |
| * | NC_007779 | 889,983 | 1 | .→A | 0.5% | 2.5 0.0 ‑0.1 | 379 | coding (259/1686 nt) | ybjL | transporter |
| * | NC_007779 | 49,800 | 1 | .→T | 0.5% | 2.4 ‑1.5 ‑0.2 | 375 | intergenic (+169/‑23) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| * | NC_007779 | 194,839 | 1 | .→T | 0.5% | 2.4 ‑1.6 ‑0.1 | 385 | intergenic (+122/‑64) | dxr/ispU | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
| * | NC_007779 | 706,385 | 1 | .→T | 0.5% | 2.4 ‑0.7 ‑0.0 | 396 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 2,306,988 | 1 | .→G | 0.5% | 2.4 ‑1.7 ‑0.1 | 382 | intergenic (‑157/‑251) | napF/eco | ferredoxin‑type protein/ecotin |
| * | NC_007779 | 2,659,908 | 1 | .→T | 0.5% | 2.2 0.0 ‑0.1 | 373 | coding (280/1215 nt) | iscS | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| * | NC_007779 | 2,827,974 | 2 | .→G | 0.5% | 2.2 0.0 ‑0.0 | 382 | coding (272/774 nt) | srlR | DNA‑binding transcriptional repressor |
| * | NC_007779 | 3,362,866 | 1 | .→A | 0.5% | 2.2 0.0 ‑0.8 | 378 | coding (205/2382 nt) | yhcD | outer membrane protein |
| * | NC_007779 | 3,786,728 | 1 | .→G | 0.5% | 1.9 0.0 ‑0.0 | 385 | intergenic (‑235/‑699) | emrD/ivbL | multidrug efflux system protein/ilvB operon leader peptide |
| * | NC_007779 | 2,287,403 | 1 | .→A | 0.5% | 1.8 0.0 ‑0.2 | 397 | intergenic (‑122/‑60) | yejK/yejL | nucleotide associated protein/hypothetical protein |
| * | NC_007779 | 2,574,652 | 1 | .→T | 0.5% | 1.8 0.0 ‑0.1 | 389 | intergenic (‑191/+102) | ypfE/maeB | carboxysome structural protein/bifunctional oxidoreductase/phosphotransacetylase |
| * | NC_007779 | 3,285,688 | 1 | .→G | 0.5% | 1.8 ‑1.6 ‑0.0 | 400 | coding (356/792 nt) | agaD | PTS system N‑acetylgalactosamine‑specific transporter subunit IID |
| * | NC_007779 | 687,378 | 0 | T→. | 0.6% | 1.7 ‑2.1 ‑0.6 | 469 | coding (792/909 nt) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,827,974 | 1 | .→T | 0.5% | 1.7 0.0 ‑0.0 | 382 | coding (272/774 nt) | srlR | DNA‑binding transcriptional repressor |
| * | NC_007779 | 4,413,559 | 1 | .→A | 0.5% | 1.7 0.0 ‑0.1 | 394 | coding (2226/2442 nt) | rnr | exoribonuclease R, RNase R |
| * | NC_007779 | 4,036,181 | 1 | .→A | 0.5% | 1.6 ‑0.7 ‑0.0 | 379 | coding (10/1494 nt) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| * | NC_007779 | 3,097,253 | 0 | T→. | 0.6% | 1.4 ‑2.1 ‑0.0 | 477 | coding (969/1008 nt) | yggM | hypothetical protein |
| * | NC_007779 | 1,097,764 | 1 | .→A | 0.3% | 1.3 ‑1.7 ‑0.1 | 732 | intergenic (+513/+42) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 223,974 | 0 | G→T | 100.0% | 1.0 | 1 | noncoding (204/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_007779 | 4,512,459 | 1 | .→G | 100.0% | ‑0.1 | 1 | coding (839/1152 nt) | insI | IS30 transposase |
| * | NC_007779 | 3,973,684 | 0 | T→A | 100.0% | ‑0.2 | 1 | C284S (TGC→AGC) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 227,948 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2190/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,950 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2192/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,951 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2193/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,952 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2194/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,953 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2195/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,954 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2196/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,955 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2197/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,958 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2200/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,959 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2201/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,960 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2202/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,961 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2203/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,962 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2204/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,964 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2206/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,965 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2207/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,966 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2208/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,967 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2209/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,968 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2210/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,971 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2213/2904 nt) | rrlH | 23S ribosomal RNA |