mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 1,371,749 | 1 | .→T | 2.4% | 27.0 0.0 ‑1.6 | 290 | intergenic (+32/‑181) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase/glucosyltransferase |
| * | NC_007779 | 3,519,465 | 1 | .→A | 1.4% | 12.3 ‑1.0 ‑0.2 | 292 | coding (7/1509 nt) | glpK | glycerol kinase |
| * | NC_007779 | 3,385,700 | 1 | .→T | 1.2% | 11.7 ‑0.5 ‑0.2 | 345 | intergenic (+44/+12) | yhcN/yhcO | hypothetical protein/barnase inhibitor |
| * | NC_007779 | 4,477,098 | 1 | .→A | 1.4% | 11.6 0.0 ‑0.1 | 283 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 2,793,036 | 1 | .→G | 1.1% | 7.1 ‑2.3 ‑0.1 | 280 | coding (128/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| * | NC_007779 | 2,005,920 | 1 | .→A | 1.0% | 5.5 ‑0.5 ‑0.0 | 298 | intergenic (‑177/‑89) | fliC/fliD | flagellar filament structural protein/flagellar filament capping protein |
| * | NC_007779 | 506,363 | 1 | .→A | 0.7% | 2.9 0.0 ‑0.2 | 273 | intergenic (‑57/+147) | ybaK/ybaP | hypothetical protein/hypothetical protein |
| * | NC_007779 | 107,544 | 1 | .→T | 0.7% | 2.8 ‑0.7 ‑0.9 | 290 | intergenic (+70/‑161) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | NC_007779 | 3,975,445 | 1 | .→A | 0.7% | 2.8 0.0 ‑1.2 | 277 | intergenic (+16/‑352) | gadX/gadW | DNA‑binding transcriptional dual regulator/DNA‑binding transcriptional activator |
| * | NC_007779 | 1,001,437 | 1 | .→A | 0.7% | 2.7 ‑0.7 ‑0.3 | 273 | coding (1800/2601 nt) | ycbS | outer membrane usher protein |
| * | NC_007779 | 2,418,070 | 1 | .→A | 0.7% | 2.7 0.0 ‑0.6 | 290 | intergenic (‑30/+53) | yfbU/yfbV | hypothetical protein/inner membrane protein |
| * | NC_007779 | 3,734,364 | 1 | .→A | 0.7% | 2.7 ‑1.5 ‑0.0 | 301 | coding (1385/1413 nt) | bglB | cryptic phospho‑beta‑glucosidase B |
| * | NC_007779 | 3,859,254 | 2 | .→T | 0.7% | 2.7 ‑2.0 ‑0.3 | 278 | intergenic (‑54/+144) | yibK/lldD | rRNA methylase/L‑lactate dehydrogenase, FMN‑linked |
| * | NC_007779 | 4,059,484 | 1 | .→T | 0.7% | 2.7 ‑1.6 ‑0.2 | 285 | intergenic (‑207/‑126) | yhhY/yhhX | acetyltransferase/oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| * | NC_007779 | 3,855,276 | 1 | .→T | 0.6% | 2.5 0.0 ‑0.2 | 316 | intergenic (‑121/‑124) | gpmI/yibN | phosphoglycero mutase III, cofactor‑independent/rhodanese‑related sulfurtransferase |
| * | NC_007779 | 1,105,181 | 1 | .→T | 0.7% | 2.4 0.0 ‑0.3 | 303 | intergenic (+38/‑21) | csgA/csgC | cryptic curlin major subunit/curli production protein |
| * | NC_007779 | 3,561,760 | 1 | .→T | 0.7% | 2.2 0.0 ‑0.0 | 293 | coding (253/786 nt) | yihW | DNA‑binding transcriptional regulator |
| * | NC_007779 | 1,273,395 | 1 | .→G | 0.7% | 2.1 ‑1.9 ‑0.2 | 297 | coding (32/1101 nt) | chaA | calcium/sodium:proton antiporter |
| * | NC_007779 | 1,097,765 | 0 | A→. | 0.5% | 1.9 0.0 ‑0.3 | 584 | intergenic (+514/+41) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 1,646,748 | 1 | .→C | 0.7% | 0.5 ‑1.7 ‑0.1 | 294 | intergenic (‑132/+85) | rem/hokD | hypothetical protein/small toxic polypeptide |
| * | NC_007779 | 4,213,848 | 0 | A→G | 100.0% | ‑0.2 | 1 | noncoding (216/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 730,851 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y283N (TAT→AAT) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,853 | 0 | T→A | 100.0% | ‑0.5 | 1 | Y283* (TAT→TAA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,854 | 0 | G→A | 100.0% | ‑0.5 | 1 | G284S (GGC→AGC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,855 | 0 | G→A | 100.0% | ‑0.5 | 1 | G284D (GGC→GAC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,856 | 0 | C→A | 100.0% | ‑0.5 | 1 | G284G (GGC→GGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,857 | 0 | C→A | 100.0% | ‑0.5 | 1 | R285R (CGG→AGG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,858 | 0 | G→A | 100.0% | ‑0.5 | 1 | R285Q (CGG→CAG) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,859 | 0 | G→A | 100.0% | ‑0.5 | 1 | R285R (CGG→CGA) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,860 | 0 | G→A | 100.0% | ‑0.5 | 1 | D286N (GAC→AAC) | rhsC | rhsC element core protein RshC |