mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 706,385 | 1 | .→T | 1.9% | 12.6 ‑2.1 ‑0.4 | 213 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 606,688 | 0 | T→. | 1.7% | 9.0 ‑1.7 ‑0.2 | 301 | intergenic (‑82/‑371) | ybdK/hokE | gamma‑glutamyl:cysteine ligase/toxic polypeptide |
| * | NC_007779 | 3,734,364 | 1 | .→A | 1.4% | 7.6 0.0 ‑0.1 | 220 | coding (1385/1413 nt) | bglB | cryptic phospho‑beta‑glucosidase B |
| * | NC_007779 | 3,519,465 | 1 | .→A | 1.4% | 7.5 0.0 ‑0.2 | 218 | coding (7/1509 nt) | glpK | glycerol kinase |
| * | NC_007779 | 1,653,490 | 1 | .→A | 1.0% | 3.2 0.0 ‑0.0 | 206 | coding (265/1197 nt) | intQ | defective integrase |
| * | NC_007779 | 2,854,568 | 1 | .→A | 1.0% | 3.2 0.0 ‑0.2 | 201 | coding (1575/2079 nt) | fhlA | DNA‑binding transcriptional activator |
| * | NC_007779 | 4,224,824 | 1 | .→T | 1.0% | 3.1 ‑0.7 ‑0.1 | 207 | coding (1254/2187 nt) | arpA | regulator of acetyl CoA synthetase |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.9% | 3.0 0.0 ‑0.3 | 231 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 583,702 | 1 | .→T | 0.9% | 2.9 ‑0.7 ‑0.7 | 211 | intergenic (+49/+201) | appY/ompT | DNA‑binding transcriptional activator/outer membrane protease VII |
| * | NC_007779 | 2,574,652 | 1 | .→T | 0.9% | 2.9 ‑1.5 ‑0.3 | 222 | intergenic (‑191/+102) | ypfE/maeB | carboxysome structural protein/bifunctional oxidoreductase/phosphotransacetylase |
| * | NC_007779 | 4,059,484 | 1 | .→T | 1.0% | 2.9 0.0 ‑0.3 | 203 | intergenic (‑207/‑126) | yhhY/yhhX | acetyltransferase/oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| * | NC_007779 | 4,477,098 | 1 | .→A | 0.9% | 2.9 ‑1.8 ‑0.2 | 219 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| * | NC_007779 | 34,111 | 1 | .→T | 0.9% | 2.8 ‑1.8 ‑0.1 | 212 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 2,974,757 | 1 | .→A | 1.0% | 2.8 0.0 ‑0.3 | 210 | intergenic (‑87/‑498) | aas/galR | bifunctional 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase/DNA‑binding transcriptional repressor |
| * | NC_007779 | 617,588 | 1 | .→G | 0.7% | 2.6 ‑0.7 ‑0.0 | 289 | coding (112/1134 nt) | fepE | regulator of length of O‑antigen component of lipopolysaccharide chains |
| * | NC_007779 | 3,059,420 | 1 | .→T | 1.0% | 2.6 ‑0.7 ‑0.3 | 206 | intergenic (+118/‑86) | argP/yliK | DNA‑binding transcriptional activator/methylmalonyl‑CoA mutase |
| * | NC_007779 | 455,713 | 1 | .→T | 0.9% | 2.2 ‑1.5 ‑0.0 | 229 | intergenic (+58/‑188) | tig/clpP | peptidyl‑prolyl cis/trans isomerase/proteolytic subunit of ClpA‑ClpP and ClpX‑ClpP ATP‑dependent serine proteases |
| * | NC_007779 | 686,664 | 0 | T→. | 1.0% | 2.2 ‑0.5 ‑0.2 | 294 | coding (428/741 nt) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 2,101,940 | 1 | .→A | 1.0% | 2.1 0.0 ‑0.0 | 205 | intergenic (‑190/+59) | ugd/gnd | UDP‑glucose 6‑dehydrogenase/gluconate‑6‑phosphate dehydrogenase, decarboxylating |
| * | NC_007779 | 2,806,566 | 1 | .→A | 0.8% | 1.3 ‑0.7 ‑0.0 | 252 | coding (779/993 nt) | proX | glycine betaine transporter subunit |
| * | NC_007779 | 1,572,746 | 0 | G→A | 100.0% | ‑0.5 | 1 | G338G (GGC→GGT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,747 | 0 | C→A | 100.0% | ‑0.5 | 1 | G338V (GGC→GTC) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,748 | 0 | C→A | 100.0% | ‑0.5 | 1 | G338C (GGC→TGC) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,749 | 0 | T→A | 100.0% | ‑0.5 | 1 | E337D (GAA→GAT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,750 | 0 | T→A | 100.0% | ‑0.5 | 1 | E337V (GAA→GTA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,751 | 0 | C→A | 100.0% | ‑0.5 | 1 | E337* (GAA→TAA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,753 | 0 | C→A | 100.0% | ‑0.5 | 1 | R336L (CGT→CTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,754 | 0 | G→A | 100.0% | ‑0.5 | 1 | R336C (CGT→TGT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,756 | 0 | C→A | 100.0% | ‑0.5 | 1 | G335V (GGT→GTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,757 | 0 | C→A | 100.0% | ‑0.5 | 1 | G335C (GGT→TGT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,758 | 0 | G→A | 100.0% | ‑0.5 | 1 | L334L (CTC→CTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,760 | 0 | G→A | 100.0% | ‑0.5 | 1 | L334F (CTC→TTC) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,761 | 0 | G→A | 100.0% | ‑0.5 | 1 | R333R (CGC→CGT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,762 | 0 | C→A | 100.0% | ‑0.5 | 1 | R333L (CGC→CTC) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,763 | 0 | G→A | 100.0% | ‑0.5 | 1 | R333C (CGC→TGC) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,764 | 0 | C→A | 100.0% | ‑0.5 | 1 | L332L (CTG→CTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,766 | 0 | G→A | 100.0% | ‑0.5 | 1 | L332L (CTG→TTG) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,767 | 0 | G→A | 100.0% | ‑0.5 | 1 | F331F (TTC→TTT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,770 | 0 | T→A | 100.0% | ‑0.5 | 1 | E330D (GAA→GAT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,771 | 0 | T→A | 100.0% | ‑0.5 | 1 | E330V (GAA→GTA) | gadB | glutamate decarboxylase B, PLP‑dependent |
| * | NC_007779 | 1,572,772 | 0 | C→A | 100.0% | ‑0.5 | 1 | E330* (GAA→TAA) | gadB | glutamate decarboxylase B, PLP‑dependent |