mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,653,996 | 1 | .→G | 1.4% | 12.3 ‑1.9 ‑0.9 | 287 | noncoding (80/87 nt) | leuT | tRNA‑Leu |
| * | NC_007779 | 34,111 | 1 | .→T | 1.3% | 11.7 0.0 ‑0.0 | 317 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 884,191 | 1 | .→T | 1.0% | 5.1 ‑1.4 ‑0.0 | 301 | coding (97/1233 nt) | cmr | multidrug efflux system protein |
| * | NC_007779 | 4,016,769 | 1 | .→C | 1.1% | 5.1 ‑2.9 0.0 | 280 | coding (248/384 nt) | yhhH | hypothetical protein |
| * | NC_007779 | 4,174,729 | 1 | .→T | 0.7% | 2.8 ‑1.5 ‑1.0 | 282 | coding (145/678 nt) | gspO | bifunctional prepilin leader peptidase/methylase |
| * | NC_007779 | 3,126,793 | 1 | .→T | 0.7% | 2.7 ‑0.7 ‑0.9 | 298 | intergenic (‑116/‑135) | glcD/glcC | glycolate oxidase subunit, FAD‑linked/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 2,757,983 | 1 | .→A | 0.7% | 2.6 ‑1.4 ‑0.1 | 299 | coding (343/1410 nt) | yfjI | hypothetical protein |
| * | NC_007779 | 3,362,866 | 1 | .→A | 0.7% | 2.6 ‑0.7 ‑0.0 | 297 | coding (205/2382 nt) | yhcD | outer membrane protein |
| * | NC_007779 | 3,523,811 | 1 | .→T | 0.7% | 2.6 ‑0.7 ‑0.5 | 303 | intergenic (‑97/+115) | yiiS/yiiR | hypothetical protein/inner membrane protein |
| * | NC_007779 | 4,000,535 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.1 | 285 | intergenic (‑231/‑160) | uspA/yhiO | universal stress global response regulator/universal stress (ethanol tolerance) protein B |
| * | NC_007779 | 4,176,563 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.1 | 298 | coding (930/984 nt) | gspK | general secretory pathway component, cryptic |
| * | NC_007779 | 149,550 | 1 | .→T | 0.7% | 2.5 0.0 ‑0.2 | 305 | coding (52/795 nt) | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| * | NC_007779 | 3,510,377 | 1 | .→A | 0.7% | 2.5 0.0 ‑0.1 | 298 | coding (507/2199 nt) | priA | primosome factor n' |
| * | NC_007779 | 3,586,831 | 1 | .→T | 0.6% | 2.5 0.0 ‑0.1 | 322 | intergenic (+283/+98) | yihA/polA | GTP‑binding protein/fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| * | NC_007779 | 1,592,800 | 1 | .→T | 0.7% | 2.4 ‑1.6 ‑0.0 | 287 | coding (1091/1323 nt) | hipA | regulator with hipB |
| * | NC_007779 | 837,856 | 1 | .→A | 0.7% | 2.2 ‑1.4 ‑0.0 | 300 | coding (1084/1086 nt) | ybiC | dehydrogenase |
| * | NC_007779 | 4,429,129 | 1 | .→A | 0.6% | 1.9 0.0 ‑0.0 | 313 | intergenic (+63/+67) | ulaF/yjfY | L‑ribulose 5‑phosphate 4‑epimerase/hypothetical protein |
| * | NC_007779 | 4,396,933 | 1 | .→A | 0.7% | 1.8 ‑0.7 ‑0.0 | 294 | intergenic (+104/‑107) | orn/glyV | oligoribonuclease/tRNA‑Gly |
| * | NC_007779 | 3,871,264 | 1 | .→G | 0.7% | 1.4 ‑1.6 ‑0.0 | 277 | intergenic (+1092/+513) | yibH/yibG | hypothetical protein/hypothetical protein |
| * | NC_007779 | 884,179 | 1 | .→G | 0.7% | 0.2 ‑0.7 0.0 | 306 | coding (85/1233 nt) | cmr | multidrug efflux system protein |
| * | NC_007779 | 3,599,439 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑18/+25) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,440 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑19/+24) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,441 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑20/+23) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,442 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑21/+22) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,443 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑22/+21) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,444 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑23/+20) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,445 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑24/+19) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,449 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑28/+15) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,450 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑29/+14) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,451 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑30/+13) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,452 | 0 | G→A | 100.0% | ‑0.5 | 1 | intergenic (‑31/+12) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,453 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑32/+11) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,454 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑33/+10) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,455 | 0 | G→A | 100.0% | ‑0.5 | 1 | intergenic (‑34/+9) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,456 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑35/+8) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,457 | 0 | G→A | 100.0% | ‑0.5 | 1 | intergenic (‑36/+7) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,458 | 0 | C→A | 100.0% | ‑0.5 | 1 | intergenic (‑37/+6) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,462 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑41/+2) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,463 | 0 | T→A | 100.0% | ‑0.5 | 1 | intergenic (‑42/+1) | alaT/ileT | tRNA‑Ala/tRNA‑Ile |
| * | NC_007779 | 3,599,464 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (77/77 nt) | ileT | tRNA‑Ile |