mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 2,839,291 | 1 | .→G | 2.2% | 20.0 ‑4.7 ‑0.0 | 279 | coding (1112/1458 nt) | ascF | PTS system fused cellobiose/arbutin/salicin‑specific transporter subunit IIBC |
| * | NC_007779 | 1,097,402 | 1 | .→A | 1.0% | 10.7 0.0 ‑0.0 | 387 | intergenic (+151/+404) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 1,097,765 | 0 | A→. | 0.9% | 8.0 ‑1.0 ‑1.2 | 576 | intergenic (+514/+41) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 1,581,577 | 1 | .→T | 1.1% | 7.1 ‑1.4 ‑0.5 | 282 | coding (928/1158 nt) | ydeM | hypothetical protein |
| * | NC_007779 | 2,898,953 | 1 | .→A | 1.1% | 7.0 0.0 ‑0.0 | 283 | intergenic (‑24/‑295) | ygcW/yqcE | deoxygluconate dehydrogenase/transporter |
| * | NC_007779 | 1,823,573 | 1 | .→A | 0.7% | 2.8 ‑0.7 ‑0.2 | 275 | intergenic (‑240/+59) | chbB/osmE | PTS system N,N'‑diacetylchitobiose‑specific transporter subunit IIB/DNA‑binding transcriptional regulator |
| * | NC_007779 | 3,385,700 | 1 | .→T | 0.7% | 2.8 ‑0.7 ‑1.0 | 279 | intergenic (+44/+12) | yhcN/yhcO | hypothetical protein/barnase inhibitor |
| * | NC_007779 | 3,981,332 | 1 | .→A | 0.6% | 2.8 ‑1.5 ‑0.2 | 320 | intergenic (‑149/+190) | mdtE/gadE | multidrug resistance efflux transporter/DNA‑binding transcriptional activator |
| * | NC_007779 | 136,449 | 1 | .→T | 0.7% | 2.7 0.0 ‑0.1 | 275 | coding (16/867 nt) | speE | spermidine synthase |
| * | NC_007779 | 1,345,020 | 1 | .→T | 0.7% | 2.7 ‑0.7 ‑0.2 | 279 | coding (23/219 nt) | osmB | lipoprotein |
| * | NC_007779 | 4,000,535 | 1 | .→A | 0.7% | 2.7 0.0 ‑0.6 | 291 | intergenic (‑231/‑160) | uspA/yhiO | universal stress global response regulator/universal stress (ethanol tolerance) protein B |
| * | NC_007779 | 2,724,454 | 1 | .→T | 0.7% | 2.6 0.0 ‑0.1 | 273 | intergenic (‑52/+271) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA |
| * | NC_007779 | 3,519,465 | 1 | .→A | 0.7% | 2.6 ‑0.7 ‑0.4 | 294 | coding (7/1509 nt) | glpK | glycerol kinase |
| * | NC_007779 | 3,576,400 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.2 | 296 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 3,689,613 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.4 | 277 | intergenic (+60/+36) | hdfR/trpT | DNA‑binding transcriptional regulator/tRNA‑Trp |
| * | NC_007779 | 881,117 | 1 | .→T | 0.7% | 2.5 ‑1.4 ‑0.0 | 299 | intergenic (‑215/‑32) | yliJ/dacC | glutathione S‑transferase/D‑alanyl‑D‑alanine carboxypeptidase |
| * | NC_007779 | 4,174,729 | 1 | .→T | 0.7% | 2.5 0.0 ‑0.7 | 297 | coding (145/678 nt) | gspO | bifunctional prepilin leader peptidase/methylase |
| * | NC_007779 | 4,644,244 | 1 | .→T | 0.6% | 2.4 ‑0.7 ‑0.0 | 310 | intergenic (+34/+26) | creD/arcA | inner membrane protein/DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| * | NC_007779 | 87,894 | 1 | .→T | 0.7% | 1.9 ‑1.5 ‑0.0 | 290 | intergenic (+46/‑134) | ilvH/fruR | acetolactate synthase III, thiamin‑dependent, small subunit/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 4,512,517 | 0 | G→C | 100.0% | 1.3 | 1 | L261V (CTT→GTT) | insI | IS30 transposase |
| * | NC_007779 | 10,627 | 1 | .→C | 0.7% | 0.1 ‑1.7 ‑0.0 | 275 | intergenic (‑133/+16) | yaaH/yaaW | inner membrane protein associated with acetate transport/hypothetical protein |
| * | NC_007779 | 3,973,305 | 0 | G→A | 100.0% | ‑0.5 | 1 | L157L (CTG→CTA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,306 | 0 | G→A | 100.0% | ‑0.5 | 1 | V158M (GTG→ATG) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,307 | 0 | T→A | 100.0% | ‑0.5 | 1 | V158E (GTG→GAG) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,308 | 0 | G→A | 100.0% | ‑0.5 | 1 | V158V (GTG→GTA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,309 | 0 | T→A | 100.0% | ‑0.5 | 1 | C159S (TGC→AGC) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,310 | 0 | G→A | 100.0% | ‑0.5 | 1 | C159Y (TGC→TAC) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,311 | 0 | C→A | 100.0% | ‑0.5 | 1 | C159* (TGC→TGA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,312 | 0 | G→A | 100.0% | ‑0.5 | 1 | G160S (GGT→AGT) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,313 | 0 | G→A | 100.0% | ‑0.5 | 1 | G160D (GGT→GAT) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,314 | 0 | T→A | 100.0% | ‑0.5 | 1 | G160G (GGT→GGA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,315 | 0 | C→A | 100.0% | ‑0.5 | 1 | P161T (CCG→ACG) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,316 | 0 | C→A | 100.0% | ‑0.5 | 1 | P161Q (CCG→CAG) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,317 | 0 | G→A | 100.0% | ‑0.5 | 1 | P161P (CCG→CCA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,318 | 0 | G→A | 100.0% | ‑0.5 | 1 | V162I (GTA→ATA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,319 | 0 | T→A | 100.0% | ‑0.5 | 1 | V162E (GTA→GAA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,321 | 0 | C→A | 100.0% | ‑0.5 | 1 | Q163K (CAA→AAA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,325 | 0 | T→A | 100.0% | ‑0.5 | 1 | I164N (ATC→AAC) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,326 | 0 | C→A | 100.0% | ‑0.5 | 1 | I164I (ATC→ATA) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,327 | 0 | T→A | 100.0% | ‑0.5 | 1 | C165S (TGC→AGC) | gadA | glutamate decarboxylase A, PLP‑dependent |
| * | NC_007779 | 3,973,328 | 0 | G→A | 100.0% | ‑0.5 | 1 | C165Y (TGC→TAC) | gadA | glutamate decarboxylase A, PLP‑dependent |