BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	1980091 =	0 (0.000)	173 (0.670)	98/180	NT	100%	intergenic (‑171/+264)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein
*	?	NC_007779	1980209 =	NA (NA)	173 (0.670)	98/180	NT	100%	intergenic (‑289/+146)	flhD/insH	DNA‑binding transcriptional dual regulator/IS5 element protein

Only 100 of 215 total aligned reads displayed.

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaag                                                                                                 >  1:13151401/1‑101 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaag                                                                                                 <  1:1267406/101‑1 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaag                                                                                                 <  1:4416046/101‑1 (MQ=255)

cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaag                                                                                                 <  1:5398176/101‑1 (MQ=255)

 gACGCACCTGTACTAGCAACTAAACGCCCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAGAC‑AAAACACTCAAGTACTTatgg                                                                                                >  1:10264960/1‑101 (MQ=255)

 gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaagg                                                                                                >  1:10767636/1‑101 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaagga                                                                                               >  1:201858/1‑101 (MQ=255)

  aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaagga                                                                                               >  1:9069457/1‑101 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaaggaag                                                                                             <  1:2213692/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaaggaag                                                                                             <  1:2868278/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaaggaag                                                                                             <  1:3249049/101‑1 (MQ=255)

    gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaaggaag                                                                                             <  1:8304228/101‑1 (MQ=255)

     cAACTGTGCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTaaggaagg                                                                                            <  1:9695930/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGt                                                                                           <  1:694907/101‑1 (MQ=255)

      aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGt                                                                                           <  1:8253554/101‑1 (MQ=255)

       aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTg                                                                                          <  1:8335524/101‑1 (MQ=255)

        cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGc                                                                                         <  1:2565814/101‑1 (MQ=255)

         tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCg                                                                                        >  1:12422503/1‑101 (MQ=255)

          gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGa                                                                                       >  1:179954/1‑101 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                    <  1:1191042/101‑1 (MQ=255)

             cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATa                                                                                    <  1:8922965/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                   <  1:11156071/101‑1 (MQ=255)

              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATaa                                                                                   <  1:470463/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                  <  1:10135916/101‑1 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                  >  1:4668605/1‑101 (MQ=255)

               cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAg                                                                                  <  1:7662934/101‑1 (MQ=255)

                gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGc                                                                                 >  1:6989835/1‑101 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCg                                                                                >  1:4507984/1‑101 (MQ=255)

                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCg                                                                                >  1:5056809/1‑101 (MQ=255)

                  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgg                                                                               <  1:11622713/101‑1 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                              >  1:12309434/1‑101 (MQ=255)

                   aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCggg                                                                              <  1:3565278/101‑1 (MQ=255)

                    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCgggg                                                                             >  1:10985419/1‑101 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGa                                                                            <  1:1200926/101‑1 (MQ=255)

                     tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGa                                                                            <  1:6858248/101‑1 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                          <  1:4386521/101‑1 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                          >  1:4085165/1‑101 (MQ=255)

                       cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                          <  1:9776221/101‑1 (MQ=255)

                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAt                                                                         <  1:5791247/101‑1 (MQ=255)

                        acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAt                                                                         >  1:7233110/1‑101 (MQ=255)

                          gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAA‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                       <  1:11386414/101‑1 (MQ=255)

                            acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                     >  1:12498531/1‑101 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    <  1:12457881/101‑1 (MQ=255)

                             caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                    >  1:12930318/1‑101 (MQ=255)

                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                   <  1:2940542/101‑1 (MQ=255)

                               tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                  <  1:9661905/101‑1 (MQ=255)

                               tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                  <  1:6059137/101‑1 (MQ=255)

                               gaCAAGGGGGGGGGGCTGCGATTTACAAAAATGCGTGATACAAATCACAA‑AAAACACTCAATTACTAAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                  <  1:11946668/100‑1 (MQ=25)

                                aCAACGGAGGGGGGCTGCGATTTTAAAAAATGCGTGATGCAGATCACAC‑AAAACCCTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                 <  1:6437334/101‑1 (MQ=255)

                                 cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                >  1:7753119/1‑101 (MQ=255)

                                  aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAA‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                               >  1:2680975/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGTGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             <  1:756118/101‑1 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             <  1:7787069/101‑1 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             >  1:10348715/1‑101 (MQ=255)

                                    cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                             <  1:4399335/101‑1 (MQ=255)

                                     gtaGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            >  1:5910148/3‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            >  1:12067939/1‑101 (MQ=255)

                                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                            <  1:3034674/101‑1 (MQ=255)

                                      gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                           >  1:1918814/1‑101 (MQ=255)

                                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGTAATTCTTCTCGGCTGACTc                                                         >  1:9400914/1‑101 (MQ=255)

                                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                         >  1:11919296/1‑101 (MQ=255)

                                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                         >  1:10076816/1‑101 (MQ=255)

                                         gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                        >  1:1962536/1‑101 (MQ=255)

                                          gtggCTGCGATTTTAAATAATGCGTGATGCAGATCAAAC‑AAAACACTAAATTATTAAAGGAAGGTGAAAATAGGCGGGGAAATTCTTCTCGGCTGACTCAg                                                       <  1:2320440/99‑1 (MQ=25)

                                           gggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAAAACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                      >  1:5088538/1‑101 (MQ=255)

                                            gtcggCGATTCTAAATAATGCGTCATGCAGATCACAC‑AAAACAAAAAATGGCTTAAGGAAGTTGAAAAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc                                                     <  1:12235926/97‑1 (MQ=16)

                                             gCTGGGATTTTCAATAATGCGTGATGCAGATCAAAC‑AAAACACACAATTACTTAAGGAAGGTGAGAATAAGAGGGGAAATTCTTCTCGGCTGACTCAGtca                                                    <  1:807271/101‑1 (MQ=25)

                                               atatatttaaaataatGCGTGATG‑GGAACAGACAAAAAAACACAATTAGTTTAGTCAGGTAAAAGAAGGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                  <  1:1041255/91‑1 (MQ=2)

                                                  gATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                               >  1:5504342/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:3174432/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:7518699/1‑101 (MQ=255)

                                                   aTTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                              >  1:3384681/1‑101 (MQ=255)

                                                    ttttCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                             >  1:5691861/1‑101 (MQ=255)

                                                       tCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCAGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                          >  1:12441287/1‑101 (MQ=255)

                                                         aataatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                        >  1:9263584/1‑101 (MQ=255)

                                                          ataatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                       >  1:12348567/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     >  1:2066474/1‑101 (MQ=255)

                                                            aatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                     >  1:7187505/1‑101 (MQ=255)

                                                              tGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                   >  1:6631998/1‑101 (MQ=255)

                                                               gCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                  >  1:4997452/1‑101 (MQ=255)

                                                                cGTGATGCAGATCCCAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                 <  1:4134017/101‑1 (MQ=255)

                                                                     tGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                            >  1:6242608/1‑101 (MQ=255)

                                                                       cAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                          >  1:10144924/1‑101 (MQ=255)

                                                                        aGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt                         >  1:10596342/1‑101 (MQ=255)

                                                                         gATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                        >  1:7313348/1‑101 (MQ=255)

                                                                           tCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                      >  1:1067776/1‑101 (MQ=255)

                                                                           tCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                      >  1:3330866/1‑101 (MQ=255)

                                                                           tCACAC‑AAAACACTCAATTACTTAAGGAAGGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                      >  1:12728038/1‑101 (MQ=255)

                                                                             acac‑aAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTtc                    >  1:2904569/1‑101 (MQ=255)

                                                                              cac‑aAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   >  1:10893282/1‑101 (MQ=255)

                                                                              cac‑aAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                   >  1:8999478/1‑101 (MQ=255)

                                                                                  aaaaCACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                >  1:1107074/1‑101 (MQ=255)

                                                                                      cacTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa            >  1:3759091/1‑101 (MQ=40)

                                                                                       acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:7917479/1‑101 (MQ=40)

                                                                                       acTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa           >  1:4986601/1‑101 (MQ=40)

                                                                                        cTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt          >  1:1688416/1‑101 (MQ=39)

                                                                                         tCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg         >  1:9338520/1‑101 (MQ=38)

                                                                                           aaTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:8666104/1‑101 (MQ=35)

                                                                                           aaTTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc       >  1:12565318/1‑101 (MQ=35)

                                                                                               aCTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa   >  1:5194048/1‑101 (MQ=31)

CGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA  >  NC_007779/1980109‑1980304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.